Factsheet for Zm00001d049000_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005757_P001
Zm00001d005931_P001
Zm00001d009674_P001
Zm00001d017784_P001
Zm00001d020460_P001
Zm00001d020774_P001
Zm00001d031840_P001
Zm00001d032175_P001
Zm00001d041780_P001
Zm00001d049000_P001
Zm00001d050443_P001
Zm00001d051573_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT1G14440.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT1G14440.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT1G14440.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT1G14440.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT1G14440.1	Zm00001d009674_P001	AT2G18350.1	16428600
AT1G14440.1	Zm00001d017784_P001	AT2G18350.1	16428600
AT1G14440.1	Zm00001d051573_P001	AT2G18350.1	16428600
AT1G14440.1	Zm00001d009674_P001	AT3G50890.1	16428600
AT1G14440.1	Zm00001d017784_P001	AT3G50890.1	16428600
AT1G14440.1	Zm00001d051573_P001	AT3G50890.1	16428600
AT1G14440.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT1G14440.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT1G14440.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT1G14440.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT1G14440.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT1G14440.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT1G14440.1	Zm00001d031840_P001	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28111	Sorghum	nucleus	80.0	85.28
TraesCS4D01G086300.1	Wheat	nucleus	58.81	63.5
TraesCS4A01G226800.1	Wheat	nucleus	59.76	62.59
TraesCS4B01G089700.1	Wheat	nucleus	58.57	61.96
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	61.43	61.87
GSMUA_Achr6P28870_001	Banana	nucleus	33.1	61.5
GSMUA_Achr9P08090_001	Banana	nucleus	34.76	60.58
GSMUA_Achr10P...	Banana	nucleus	34.76	60.33
GSMUA_Achr1P13300_001	Banana	nucleus	32.38	60.18
GSMUA_Achr3P16680_001	Banana	nucleus	32.86	59.23
GSMUA_Achr6P17420_001	Banana	nucleus	29.05	58.94
HORVU4Hr1G015250.6	Barley	nucleus, plastid	58.1	58.1
KRG92484	Soybean	nucleus	23.33	51.58
Zm00001d041780_P001	Maize	nucleus	39.52	47.56
Zm00001d052395_P001	Maize	plastid	9.05	44.19
Zm00001d020774_P001	Maize	nucleus	28.57	43.96
Zm00001d005931_P001	Maize	nucleus	29.05	42.66
Solyc01g102980.2.1	Tomato	nucleus	28.33	41.03
PGSC0003DMT400053397	Potato	nucleus	27.86	40.77
Zm00001d031840_P001	Maize	nucleus	29.05	39.61
Zm00001d023289_P001	Maize	cytosol	8.81	37.76
Zm00001d023286_P001	Maize	cytosol	8.81	37.76
AT1G14440.1	Thale cress	nucleus	27.62	37.18
Zm00001d044662_P001	Maize	cytosol, plastid	8.81	37.0
CDX81638	Canola	nucleus	27.62	36.83
Zm00001d009674_P001	Maize	nucleus	20.95	36.82
Bra026219.1-P	Field mustard	nucleus	27.14	36.77
CDY45257	Canola	nucleus	27.14	36.66
CDY53549	Canola	nucleus	27.38	36.62
Bra026830.1-P	Field mustard	nucleus	27.38	36.62
VIT_07s0130g00240.t01	Wine grape	nucleus	17.14	36.36
Bra026589.1-P	Field mustard	nucleus	25.95	36.33
CDY09363	Canola	nucleus	25.71	36.24
AT2G02540.2	Thale cress	nucleus	26.67	36.13
CDY41692	Canola	nucleus	25.71	36.0
CDY39311	Canola	nucleus	26.19	35.95
Zm00001d032177_P001	Maize	mitochondrion	9.76	34.45
Zm00001d020459_P001	Maize	mitochondrion	8.81	33.33
Zm00001d003645_P001	Maize	nucleus	23.57	33.0
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	18.81	32.92
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	18.1	32.9
Zm00001d050452_P001	Maize	mitochondrion	9.52	31.5
Zm00001d032175_P001	Maize	cytosol	22.62	25.47
Zm00001d005757_P001	Maize	nucleus	21.19	24.65
Zm00001d020460_P001	Maize	nucleus	21.67	24.59
Zm00001d050443_P001	Maize	nucleus	20.95	24.04
Zm00001d017784_P001	Maize	nucleus	22.38	22.54
Zm00001d051573_P001	Maize	nucleus	23.1	21.75

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103652837	MapMan:15.5.3.13	ProteinID:AIB05536.1	ProteinID:AQK49348.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:K7TRK3	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF42
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00022112E7	InterPro:ZF_HD_homeobox_Cys/His_dimer	EnsemblPlantsGene:Zm00001d049000
EnsemblPlants:Zm00001d049000_P001	EnsemblPlants:Zm00001d049000_T001	SEG:seg	:	:	:

Description

ZF-HD-transcription factor 1Putative homeobox DNA-binding domain superfamily protein

Coordinates

chr4:-:12135060..12136322

Molecular Weight (calculated)

43816.0 Da

IEP (calculated)

7.910

GRAVY (calculated)

-0.569

Length

420 amino acids

Sequence
(BLAST)

001: MVSIVPLQRT EASAAPARSI FSLERRLREE DDGSGPGGMD LSGTQGELAI PMHANVASPY GAGVGGHVLQ LHRDHGSNNG QSPAPPLPPP PAAAEETESS
101: AKKRGPAAGA GGGGGSSTVK YRECLKNHAA AIGGNATDGC GEFMPSGEEG SLEALKCSAC GCHRNFHRKE VDDEDDDMYG AAEGFSGLGL GLGLGHGHGH
201: RAARRLLAPA MAHPHHKSGG GGLLISGADP YAAYASARAL PPALPPPPGH AHHHHQYVMP LNMMHTSESD DMEGGRGGCG DAARGSGGSS SSRKRFRTKF
301: TPEQKARMLE FAERVGWRLQ KLDDGMVQAF CQEIGVKRRV LKVWMHNNKH NLATKRLEAS PAQEQAMAGM ASPPPPPPPP QLHLPLQMPA GVMPPPPPPP
401: QAGSSCHRGG PGSPLPLKLE

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.