Factsheet for Bra026830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	Bra026219.1-P	AT1G14440.1	16428600
AT1G14440.1	Bra026830.1-P	AT1G14440.1	16428600
AT1G14440.1	Bra004399.1-P	AT1G69600.1	16428600
AT1G14440.1	Bra007869.1-P	AT1G69600.1	16428600
AT1G14440.1	Bra008185.1-P	AT1G75240.1	16428600
AT1G14440.1	Bra015857.1-P	AT1G75240.1	16428600
AT1G14440.1	Bra037224.1-P	AT2G18350.1	16428600
AT1G14440.1	Bra025363.1-P	AT3G28920.1	16428600
AT1G14440.1	Bra039038.1-P	AT3G28920.1	16428600
AT1G14440.1	Bra012882.1-P	AT3G50890.1	16428600
AT1G14440.1	Bra036852.1-P	AT3G50890.1	16428600
AT1G14440.1	Bra008712.1-P	AT5G15210.1	16428600
AT1G14440.1	Bra025644.1-P	AT5G39760.1	16428600
AT1G14440.1	Bra024382.1-P	AT5G65410.1	16428600
AT1G14440.1	Bra031859.1-P	AT5G65410.1	16428600
AT1G14440.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53549	Canola	nucleus	100.0	100.0
CDX81638	Canola	nucleus	98.09	97.78
AT1G14440.1	Thale cress	nucleus	88.53	89.1
Bra026219.1-P	Field mustard	nucleus	85.03	86.13
Bra026589.1-P	Field mustard	nucleus	54.46	57.0
GSMUA_Achr6P28870_001	Banana	nucleus	38.85	53.98
GSMUA_Achr1P13300_001	Banana	nucleus	38.53	53.54
VIT_12s0035g01880.t01	Wine grape	nucleus	44.9	50.18
Bra031051.1-P	Field mustard	mitochondrion	14.01	50.0
GSMUA_Achr9P08090_001	Banana	nucleus	38.22	49.79
GSMUA_Achr6P17420_001	Banana	nucleus	32.8	49.76
GSMUA_Achr3P16680_001	Banana	nucleus	36.62	49.36
GSMUA_Achr10P...	Banana	nucleus	37.58	48.76
KRH51275	Soybean	nucleus	42.04	46.64
Bra016538.1-P	Field mustard	mitochondrion	13.06	46.59
Bra025688.1-P	Field mustard	mitochondrion	13.06	46.59
KRH01880	Soybean	nucleus	41.72	45.8
PGSC0003DMT400053397	Potato	nucleus	40.13	43.9
Solyc01g102980.2.1	Tomato	nucleus	40.45	43.79
Bra015898.1-P	Field mustard	mitochondrion	13.06	43.62
Bra013822.1-P	Field mustard	nucleus	30.89	43.11
Bra025362.1-P	Field mustard	mitochondrion	13.69	43.0
Bra010485.1-P	Field mustard	nucleus	28.03	41.9
Bra039039.1-P	Field mustard	mitochondrion	13.06	41.84
Bra003791.1-P	Field mustard	mitochondrion	12.42	40.21
Bra037816.1-P	Field mustard	nucleus	28.66	37.19
Bra006657.1-P	Field mustard	nucleus	21.02	36.26
Bra007869.1-P	Field mustard	nucleus	25.8	35.22
Bra036852.1-P	Field mustard	nucleus	23.89	34.25
Bra004399.1-P	Field mustard	nucleus	25.16	34.2
Bra031859.1-P	Field mustard	nucleus	29.62	34.19
Bra037224.1-P	Field mustard	nucleus	28.03	33.21
Bra008185.1-P	Field mustard	nucleus	30.89	32.99
Bra024382.1-P	Field mustard	nucleus	30.57	32.76
Bra003759.1-P	Field mustard	nucleus	30.25	32.31
KXG23238	Sorghum	nucleus	33.44	32.01
Bra008712.1-P	Field mustard	cytosol	26.43	31.56
Bra015857.1-P	Field mustard	nucleus	30.25	31.46
Zm00001d041780_P001	Maize	nucleus	33.76	30.37
TraesCS4D01G086300.1	Wheat	nucleus	36.94	29.82
KXG28111	Sorghum	nucleus	36.94	29.44
TraesCS4B01G089700.1	Wheat	nucleus	36.94	29.22
TraesCS4A01G226800.1	Wheat	nucleus	36.94	28.93
Os12t0208900-00	Rice	nucleus	20.38	28.83
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	37.58	28.3
Bra039038.1-P	Field mustard	nucleus	27.39	27.83
HORVU4Hr1G015250.6	Barley	nucleus, plastid	36.62	27.38
Zm00001d049000_P001	Maize	plastid	36.62	27.38
Bra025644.1-P	Field mustard	nucleus	27.07	26.81
Bra012882.1-P	Field mustard	nucleus	21.66	25.66
Bra025363.1-P	Field mustard	nucleus	26.75	24.42
Bra027455.1-P	Field mustard	nucleus	20.38	22.3
Bra039615.1-P	Field mustard	cytosol	12.74	22.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra026830	EnsemblPlants:Bra026830.1	EnsemblPlants:Bra026830.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4EDH0	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF19
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002542DA0	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT1G14440 (E=4e-134) AtHB31 | AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor

Coordinates

chrA09:+:33906614..33907558

Molecular Weight (calculated)

35390.6 Da

IEP (calculated)

7.473

GRAVY (calculated)

-0.903

Length

314 amino acids

Sequence
(BLAST)

001: MEIASQEDHD MPIPLNTAFV GGGGGHGHMI HHHNDHHAAN SAPPTHNNNN ITTQPPQMPL HGNGHGNNHD HRQHQDPHHV SYNAIIKKPI ITYKECLKNH
101: AAAMGGNATD GCGEFMPSGE DGSIEALTCS ACNCHRNFHR KEVEGETAAT AISSFHQPPP PRKLMLNHHN IRSAMPHKMI MPVGVSNYRY MHHSESDDFM
201: EEDGVTTASR PPPYNQKKRF RTKFTPEQKE KMLSFAEKVG WKLQRQEDSV VQRFCEEIGV KRRVLKVWMH NNKLHFSKKD SSNSINLEDN DNEKINNVNN
301: VDLSGNIDMT KIVP

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.