Factsheet for Bra015898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008712.1-P
Bra025644.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74660.1	Bra008712.1-P	AT5G15210.1	21245844
AT1G74660.1	Bra025644.1-P	AT5G39760.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96558	Canola	mitochondrion	100.0	100.0
Bra003791.1-P	Field mustard	mitochondrion	84.04	81.44
AT1G74660.1	Thale cress	mitochondrion	88.3	81.37
Bra031051.1-P	Field mustard	mitochondrion	75.53	80.68
Bra025688.1-P	Field mustard	mitochondrion	75.53	80.68
Bra016538.1-P	Field mustard	mitochondrion	73.4	78.41
Bra039039.1-P	Field mustard	mitochondrion	58.51	56.12
Bra025362.1-P	Field mustard	mitochondrion	58.51	55.0
Bra039615.1-P	Field mustard	cytosol	40.43	20.99
Bra010485.1-P	Field mustard	nucleus	42.55	19.05
Bra013822.1-P	Field mustard	nucleus	44.68	18.67
Bra036852.1-P	Field mustard	nucleus	41.49	17.81
Bra037816.1-P	Field mustard	nucleus	45.74	17.77
Bra007869.1-P	Field mustard	nucleus	38.3	15.65
Bra037224.1-P	Field mustard	nucleus	43.62	15.47
Bra006657.1-P	Field mustard	nucleus	29.79	15.38
Bra004399.1-P	Field mustard	nucleus	37.23	15.15
Bra031859.1-P	Field mustard	nucleus	43.62	15.07
Bra024382.1-P	Field mustard	nucleus	44.68	14.33
Bra008185.1-P	Field mustard	nucleus	44.68	14.29
Bra026589.1-P	Field mustard	nucleus	44.68	14.0
Bra012882.1-P	Field mustard	nucleus	39.36	13.96
Bra015857.1-P	Field mustard	nucleus	44.68	13.91
Bra003759.1-P	Field mustard	nucleus	42.55	13.61
Bra026830.1-P	Field mustard	nucleus	43.62	13.06
Bra008712.1-P	Field mustard	cytosol	36.17	12.93
Bra026219.1-P	Field mustard	nucleus	42.55	12.9
Bra039038.1-P	Field mustard	nucleus	39.36	11.97
Bra025644.1-P	Field mustard	nucleus	38.3	11.36
Bra025363.1-P	Field mustard	nucleus	39.36	10.76
Bra027455.1-P	Field mustard	nucleus	31.91	10.45

Protein Annotations

EnsemblPlants:Bra015898.1	EnsemblPlants:Bra015898.1-P	EnsemblPlantsGene:Bra015898	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF7	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	TIGRFAMs:TIGR01566
UniParc:UPI0002541E88	UniProt:M4DHC1	MapMan:15.5.3.13	:	:	:

Description

AT1G74660 (E=1e-034) MIF1 | MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor

Coordinates

chrA07:-:20316867..20317151

Molecular Weight (calculated)

10348.2 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.589

Length

94 amino acids

Sequence
(BLAST)

1: MKRQMVIKQK SRKSNTSSCT TTSSAISNIR YVECQKNHAA NIGGYAIDGC REFMASGNEG TVEALRCAAC GCHRNFHRKE VNTEVVCEYS PPNA

Best Arabidopsis Sequence Match ( AT1G74660.1 )
(BLAST)

001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA

Arabidopsis Description

MIF1Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.