Factsheet for Bra027455.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra024382.1-P
Bra025644.1-P
Bra031859.1-P
Bra037816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42780.1	Bra004399.1-P	AT1G69600.1	16428600
AT5G42780.1	Bra007869.1-P	AT1G69600.1	16428600
AT5G42780.1	Bra025644.1-P	AT5G39760.1	16428600
AT5G42780.1	Bra024382.1-P	AT5G65410.1	16428600
AT5G42780.1	Bra031859.1-P	AT5G65410.1	16428600
AT5G42780.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G42780.1	Thale cress	nucleus	52.26	61.98
Bra031051.1-P	Field mustard	mitochondrion	11.85	38.64
VIT_17s0000g00810.t01	Wine grape	nucleus	20.56	38.06
Bra025688.1-P	Field mustard	mitochondrion	11.15	36.36
Solyc03g098060.1.1	Tomato	nucleus	22.65	36.31
PGSC0003DMT400083993	Potato	nucleus	22.3	35.75
Bra016538.1-P	Field mustard	mitochondrion	10.8	35.23
Bra003791.1-P	Field mustard	mitochondrion	11.85	35.05
Bra025362.1-P	Field mustard	mitochondrion	11.5	33.0
Bra039039.1-P	Field mustard	mitochondrion	11.15	32.65
Bra015898.1-P	Field mustard	mitochondrion	10.45	31.91
KRH44088	Soybean	nucleus	16.03	31.51
Bra006657.1-P	Field mustard	nucleus	19.16	30.22
KRH26349	Soybean	nucleus	15.68	27.78
Bra013822.1-P	Field mustard	nucleus	21.6	27.56
Bra010485.1-P	Field mustard	nucleus	19.86	27.14
Bra036852.1-P	Field mustard	nucleus	20.56	26.94
Bra037816.1-P	Field mustard	nucleus	21.6	25.62
Bra007869.1-P	Field mustard	nucleus	20.21	25.22
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	20.91	25.21
Bra004399.1-P	Field mustard	nucleus	20.21	25.11
TraesCSU01G070700.1	Wheat	cytosol, mitochondrion, nucleus	20.56	25.0
Bra031859.1-P	Field mustard	nucleus	23.34	24.63
TraesCS4A01G264100.1	Wheat	cytosol, mitochondrion, nucleus	20.21	24.58
TraesCS4B01G050800.1	Wheat	cytosol, mitochondrion, nucleus	20.21	24.58
EER93559	Sorghum	cytosol, mitochondrion, nucleus	19.86	24.36
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	19.51	24.24
KRH26348	Soybean	nucleus	16.03	24.21
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	20.21	24.17
Bra037224.1-P	Field mustard	nucleus	22.3	24.15
Bra003759.1-P	Field mustard	nucleus	24.39	23.81
Bra008185.1-P	Field mustard	nucleus	24.04	23.47
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	19.51	23.33
KRH26296	Soybean	nucleus	16.03	23.23
Bra008712.1-P	Field mustard	cytosol	21.25	23.19
Bra024382.1-P	Field mustard	nucleus	23.34	22.87
Bra015857.1-P	Field mustard	nucleus	24.04	22.85
Bra026589.1-P	Field mustard	nucleus	23.0	22.0
Bra026830.1-P	Field mustard	nucleus	22.3	20.38
Bra026219.1-P	Field mustard	nucleus	21.95	20.32
Bra039615.1-P	Field mustard	cytosol	12.54	19.89
Bra039038.1-P	Field mustard	nucleus	21.25	19.74
Bra025644.1-P	Field mustard	nucleus	21.6	19.56
Bra012882.1-P	Field mustard	nucleus	17.77	19.25
Bra025363.1-P	Field mustard	nucleus	20.91	17.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra027455	EnsemblPlants:Bra027455.1	EnsemblPlants:Bra027455.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4EF93	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF16
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000254215F	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT5G42780 (E=2e-047) AtHB27 | AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27); DNA binding / transcription factor

Coordinates

chrA09:+:14198406..14199269

Molecular Weight (calculated)

33120.9 Da

IEP (calculated)

8.553

GRAVY (calculated)

-1.103

Length

287 amino acids

Sequence
(BLAST)

001: MDETKSKIEE KCRRRTKATP ICRETGDHVH SPPTRITKST RPTHAPPPNL ESIFRLTPEP RYGECRKNQA ASAGTTAYDG CGEFVSANPG EDSFDCAACG
101: CHRSFHRKES LSDGILEVLK ISPSQFRQIF CSPYGEAEEK KRIAMDKSPE EEEAARAKRL KTKFTAEQTE KMRSYAEKVG WKLSSEGRER VREFCDGIGV
201: TRKNLRVWMN NHKEANGRVD EEEEGRVKRF KTKFTAEQTE RMRSYAEKLR WKVGPEDREE TEVFCNEIGV NRNNFMIWMN NHKEGRD

Best Arabidopsis Sequence Match ( AT5G42780.1 )
(BLAST)

001: MDEIKPKKEE NSKRRRNVKP ICRETGDHVH YLPTCKTKPK PTRTHHAPPP ILDSIFKVTH KPHYYECRKN HAADIGTTAY DGCGEFVSST GEEDSLNCAA
101: CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK
201: LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE

Arabidopsis Description

ZHD13Zinc-finger homeodomain protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMY7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.