Factsheet for Bra003791.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008712.1-P
Bra025644.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74660.1	Bra008712.1-P	AT5G15210.1	21245844
AT1G74660.1	Bra025644.1-P	AT5G39760.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68172	Canola	mitochondrion	100.0	100.0
CDX85849	Canola	mitochondrion	100.0	100.0
AT1G74660.1	Thale cress	mitochondrion	92.78	88.24
Bra025688.1-P	Field mustard	mitochondrion	78.35	86.36
Bra031051.1-P	Field mustard	mitochondrion	76.29	84.09
Bra015898.1-P	Field mustard	mitochondrion	81.44	84.04
Bra016538.1-P	Field mustard	mitochondrion	74.23	81.82
Bra039039.1-P	Field mustard	mitochondrion	57.73	57.14
Bra025362.1-P	Field mustard	mitochondrion	57.73	56.0
Bra039615.1-P	Field mustard	cytosol	38.14	20.44
Bra010485.1-P	Field mustard	nucleus	42.27	19.52
Bra013822.1-P	Field mustard	nucleus	44.33	19.11
Bra037816.1-P	Field mustard	nucleus	46.39	18.59
Bra036852.1-P	Field mustard	nucleus	41.24	18.26
Bra007869.1-P	Field mustard	nucleus	38.14	16.09
Bra006657.1-P	Field mustard	nucleus	29.9	15.93
Bra037224.1-P	Field mustard	nucleus	43.3	15.85
Bra004399.1-P	Field mustard	nucleus	37.11	15.58
Bra031859.1-P	Field mustard	nucleus	43.3	15.44
Bra024382.1-P	Field mustard	nucleus	46.39	15.36
Bra012882.1-P	Field mustard	nucleus	39.18	14.34
Bra008185.1-P	Field mustard	nucleus	41.24	13.61
Bra008712.1-P	Field mustard	cytosol	36.08	13.31
Bra003759.1-P	Field mustard	nucleus	40.21	13.27
Bra015857.1-P	Field mustard	nucleus	41.24	13.24
Bra026589.1-P	Field mustard	nucleus	40.21	13.0
Bra026830.1-P	Field mustard	nucleus	40.21	12.42
Bra039038.1-P	Field mustard	nucleus	39.18	12.3
Bra026219.1-P	Field mustard	nucleus	39.18	12.26
Bra027455.1-P	Field mustard	nucleus	35.05	11.85
Bra025644.1-P	Field mustard	nucleus	38.14	11.67
Bra025363.1-P	Field mustard	nucleus	39.18	11.05

Protein Annotations

EnsemblPlants:Bra003791.1	EnsemblPlants:Bra003791.1-P	EnsemblPlantsGene:Bra003791	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF7	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	TIGRFAMs:TIGR01566
UniParc:UPI0000E6471B	UniProt:M4CHV8	MapMan:15.5.3.13	:	:	:

Description

AT1G74660 (E=7e-035) MIF1 | MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor

Coordinates

chrA07:+:15082445..15082738

Molecular Weight (calculated)

10649.4 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.670

Length

97 amino acids

Sequence
(BLAST)

1: MKKRQVVIKQ RSRNSNTSSS WTTTSSSATS SIRYVECQKN HAANIGGYAV DGCREFMAAG VEGTDDSLRC AACGCHRNFH RKEVNTEVVC EYSPPNA

Best Arabidopsis Sequence Match ( AT1G74660.1 )
(BLAST)

001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA

Arabidopsis Description

MIF1Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.