Factsheet for Bra004399.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra006657.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra009662.1-P
Bra010738.1-P
Bra011840.1-P
Bra012882.1-P
Bra013976.1-P
Bra015857.1-P
Bra016162.1-P
Bra023619.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026812.1-P
Bra026830.1-P
Bra027455.1-P
Bra028528.1-P
Bra031859.1-P
Bra033570.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P
Bra037865.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69600.1	Bra026219.1-P	AT1G14440.1	16428600
AT1G69600.1	Bra026830.1-P	AT1G14440.1	16428600
AT1G69600.1	Bra026812.1-P	AT1G14687.1	16428600
AT1G69600.1	Bra004399.1-P	AT1G69600.1	16428600
AT1G69600.1	Bra007869.1-P	AT1G69600.1	16428600
AT1G69600.1	Bra016162.1-P	AT1G71050.1	18974936
AT1G69600.1	Bra008185.1-P	AT1G75240.1	16428600
AT1G69600.1	Bra015857.1-P	AT1G75240.1	16428600
AT1G69600.1	Bra028528.1-P	AT2G18196.1	18974936
AT1G69600.1	Bra037224.1-P	AT2G18350.1	16428600
AT1G69600.1	Bra025363.1-P	AT3G28920.1	16428600
AT1G69600.1	Bra039038.1-P	AT3G28920.1	16428600
AT1G69600.1	Bra012882.1-P	AT3G50890.1	16428600
AT1G69600.1	Bra036852.1-P	AT3G50890.1	16428600
AT1G69600.1	Bra037865.1-P	AT4G08570.1	18974936
AT1G69600.1	Bra010738.1-P	AT4G38580.1	18974936
AT1G69600.1	Bra033570.1-P	AT4G38580.1	18974936
AT1G69600.1	Bra011840.1-P	AT4G39700.1	18974936
AT1G69600.1	Bra008712.1-P	AT5G15210.1	16428600
AT1G69600.1	Bra013976.1-P	AT5G17450.1	18974936
AT1G69600.1	Bra023619.1-P	AT5G17450.1	18974936
AT1G69600.1	Bra025644.1-P	AT5G39760.1	16428600
AT1G69600.1	Bra027455.1-P	AT5G42780.1	16428600
AT1G69600.1	Bra006657.1-P	AT5G60480.1	16428600
AT1G69600.1	Bra024382.1-P	AT5G65410.1	16428600
AT1G69600.1	Bra031859.1-P	AT5G65410.1	16428600
AT1G69600.1	Bra037816.1-P	AT5G65410.1	16428600
AT1G69600.1	Bra009662.1-P	AT5G66110.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95914	Canola	nucleus	99.13	99.13
Bra007869.1-P	Field mustard	nucleus	90.04	90.43
CDY01760	Canola	nucleus	97.84	88.28
AT1G69600.1	Thale cress	nucleus	81.82	78.1
Bra006657.1-P	Field mustard	nucleus	40.69	51.65
Bra025688.1-P	Field mustard	mitochondrion	15.58	40.91
Bra031051.1-P	Field mustard	mitochondrion	15.58	40.91
Bra016538.1-P	Field mustard	mitochondrion	14.72	38.64
Bra013822.1-P	Field mustard	nucleus	36.36	37.33
Bra015898.1-P	Field mustard	mitochondrion	15.15	37.23
Bra003791.1-P	Field mustard	mitochondrion	15.58	37.11
Bra010485.1-P	Field mustard	nucleus	32.9	36.19
Bra008712.1-P	Field mustard	cytosol	41.13	36.12
Bra039038.1-P	Field mustard	nucleus	46.32	34.63
Bra025362.1-P	Field mustard	mitochondrion	14.29	33.0
Bra039039.1-P	Field mustard	mitochondrion	13.85	32.65
Bra037816.1-P	Field mustard	nucleus	34.2	32.64
Bra025644.1-P	Field mustard	nucleus	43.72	31.86
Bra036852.1-P	Field mustard	nucleus	29.44	31.05
Bra025363.1-P	Field mustard	nucleus	45.89	30.81
Bra031859.1-P	Field mustard	nucleus	34.63	29.41
Bra024382.1-P	Field mustard	nucleus	34.63	27.3
Bra026589.1-P	Field mustard	nucleus	33.77	26.0
Bra003759.1-P	Field mustard	nucleus	32.9	25.85
Bra008185.1-P	Field mustard	nucleus	32.47	25.51
Bra026219.1-P	Field mustard	nucleus	34.2	25.48
Bra026830.1-P	Field mustard	nucleus	34.2	25.16
Bra015857.1-P	Field mustard	nucleus	32.47	24.83
Bra037224.1-P	Field mustard	nucleus	27.71	24.15
Bra012882.1-P	Field mustard	nucleus	27.27	23.77
Bra027455.1-P	Field mustard	nucleus	25.11	20.21
Bra039615.1-P	Field mustard	cytosol	14.72	18.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra004399	EnsemblPlants:Bra004399.1	EnsemblPlants:Bra004399.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4CJL5	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF29
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00025418A1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT1G69600 (E=2e-088) ZFHD1, ATHB29 | ZFHD1 (ZINC FINGER HOMEODOMAIN 1); DNA binding / transcription activator/ transcription factor

Coordinates

chrA07:+:18460024..18460719

Molecular Weight (calculated)

25013.3 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.728

Length

231 amino acids

Sequence
(BLAST)

001: MGVCYKECLK NHAANLGGHA LDGCGEFMPT PTATPTDPSS LRCAACGCHR NFHRRDPSDH LNFLPSHPTS SPSGTESPPS QSLHNVASPV PCSYYTSAPH
101: HMLLSLSSGF PGPADQDPAA VRSENSSKGG MRKRTRTKFT AEQKIKMRAF AEKAGWKING CDEKSVREFC SENGIERGVL KVWMHNNKYS LLNGKNREIL
201: SMEDQPRLCL NTQSCNNGGE DGDNVGGSSS S

Best Arabidopsis Sequence Match ( AT1G69600.1 )
(BLAST)

001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS

Arabidopsis Description

ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.