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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, nucleus
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007869.1-P Field mustard nucleus 78.1 82.17
CDX95914 Canola nucleus 78.1 81.82
Bra004399.1-P Field mustard nucleus 78.1 81.82
CDY01760 Canola nucleus 86.36 81.64
CDY44079 Canola nucleus 84.71 80.39
CDY28566 Canola nucleus 83.88 79.61
AT5G60480.1 Thale cress nucleus 44.63 48.43
AT1G18835.1 Thale cress mitochondrion 15.7 43.18
AT5G15210.1 Thale cress nucleus 42.56 38.01
AT1G74660.1 Thale cress mitochondrion 15.29 36.27
AT4G24660.2 Thale cress nucleus 33.47 35.06
AT3G28917.1 Thale cress mitochondrion 14.05 34.0
AT3G28920.1 Thale cress nucleus 42.98 33.33
AT5G39760.1 Thale cress nucleus 43.39 31.44
AT5G65410.1 Thale cress nucleus 32.64 28.32
AT3G50890.1 Thale cress nucleus 28.93 28.11
AT5G42780.1 Thale cress nucleus 26.86 26.86
AT1G14440.1 Thale cress nucleus 34.3 26.6
AT2G02540.2 Thale cress nucleus 33.47 26.13
AT2G18350.1 Thale cress nucleus 27.69 25.57
AT1G75240.1 Thale cress nucleus 31.82 24.92
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EntrezGene:843296UniProt:A0A178WE06ProteinID:AAF24606.1ProteinID:AEE34954.1
ArrayExpress:AT1G69600EnsemblPlantsGene:AT1G69600RefSeq:AT1G69600TAIR:AT1G69600RefSeq:AT1G69600-TAIR-GEnsemblPlants:AT1G69600.1
TAIR:AT1G69600.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009414GO:GO:0009628GO:GO:0009987GO:GO:0042803GO:GO:0045893GO:GO:0046872
InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456RefSeq:NP_177118.1ProteinID:OAP16354.1PFAM:PD125774
PFAM:PF04770PO:PO:0000037PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009009PO:PO:0009010PO:PO:0009030
PO:PO:0009031PO:PO:0009046PO:PO:0025281PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF29
UniProt:Q9SEZ1SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI00000A649FSymbol:ZFHD1
InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::::
Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
Coordinates
chr1:+:26182156..26183546
Molecular Weight (calculated)
26285.0 Da
IEP (calculated)
8.116
GRAVY (calculated)
-0.601
Length
242 amino acids
Sequence
(BLAST)
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.