Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69628 | Canola | nucleus | 56.05 | 69.83 |
| CDX88760 | Canola | nucleus | 56.05 | 69.06 |
| Bra006657.1-P | Field mustard | nucleus | 55.61 | 68.13 |
| AT1G69600.1 | Thale cress | nucleus | 48.43 | 44.63 |
| AT5G15210.1 | Thale cress | nucleus | 42.15 | 34.69 |
| AT1G18835.1 | Thale cress | mitochondrion | 13.0 | 32.95 |
| AT4G24660.2 | Thale cress | nucleus | 32.74 | 31.6 |
| AT1G74660.1 | Thale cress | mitochondrion | 13.45 | 29.41 |
| AT3G28917.1 | Thale cress | mitochondrion | 13.0 | 29.0 |
| AT3G28920.1 | Thale cress | nucleus | 40.36 | 28.85 |
| AT5G39760.1 | Thale cress | nucleus | 40.81 | 27.25 |
| AT5G65410.1 | Thale cress | nucleus | 33.63 | 26.88 |
| AT3G50890.1 | Thale cress | nucleus | 29.15 | 26.1 |
| AT5G42780.1 | Thale cress | nucleus | 25.56 | 23.55 |
| AT2G02540.2 | Thale cress | nucleus | 32.29 | 23.23 |
| AT2G18350.1 | Thale cress | nucleus | 26.91 | 22.9 |
| AT1G14440.1 | Thale cress | nucleus | 31.84 | 22.76 |
| AT1G75240.1 | Thale cress | nucleus | 30.04 | 21.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:836169 | ProteinID:AED97335.2 | ArrayExpress:AT5G60480 | EnsemblPlantsGene:AT5G60480 |
| RefSeq:AT5G60480 | TAIR:AT5G60480 | RefSeq:AT5G60480-TAIR-G | EnsemblPlants:AT5G60480.1 | TAIR:AT5G60480.1 | Symbol:AtHB26 |
| ProteinID:BAB08231.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042803 |
| GO:GO:0046872 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | RefSeq:NP_200856.2 | PFAM:PD125774 |
| PFAM:PF04770 | PO:PO:0009046 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF29 | UniProt:Q9FKJ9 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00000A7679 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZHD12Zinc-finger homeodomain protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ9]
Coordinates
chr5:+:24323371..24324335
Molecular Weight (calculated)
25238.1 Da
IEP (calculated)
10.350
GRAVY (calculated)
-0.688
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLSKPNRQ FLSPTTNNQD TGREQTIACA RDMVVLYNEC LKNHAVSLGG HALDGCGEFT PKSTTILTDP PSLRCDACGC HRNFHRRSPS DGFSQHRSPP
101: SPLQLQPLAP VPNLLLSLSS GFFGPSDQEV KNKFTVERDV RKTAMIKKHK RTKFTAEQKV KMRGFAERAG WKINGWDEKW VREFCSEVGI ERKVLKVWIH
201: NNKYFNNGRS RDTTSSMSLN LKL
101: SPLQLQPLAP VPNLLLSLSS GFFGPSDQEV KNKFTVERDV RKTAMIKKHK RTKFTAEQKV KMRGFAERAG WKINGWDEKW VREFCSEVGI ERKVLKVWIH
201: NNKYFNNGRS RDTTSSMSLN LKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.