Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024382.1-P | Field mustard | nucleus | 89.96 | 85.67 |
| CDY37827 | Canola | nucleus | 83.51 | 85.66 |
| Bra031859.1-P | Field mustard | nucleus | 83.51 | 85.66 |
| CDY54719 | Canola | nucleus | 73.84 | 85.48 |
| CDY33960 | Canola | nucleus | 81.72 | 84.76 |
| CDY14559 | Canola | nucleus | 88.89 | 84.64 |
| CDX81284 | Canola | nucleus | 76.34 | 83.53 |
| Bra037816.1-P | Field mustard | nucleus | 72.4 | 83.47 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 36.92 | 50.0 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 40.14 | 48.48 |
| PGSC0003DMT400084919 | Potato | nucleus | 30.11 | 48.0 |
| Solyc05g051420.1.1 | Tomato | nucleus | 28.67 | 47.9 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 34.77 | 46.86 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 40.86 | 46.72 |
| AT1G18835.1 | Thale cress | mitochondrion | 14.7 | 46.59 |
| GSMUA_Achr10P... | Banana | nucleus | 37.99 | 46.29 |
| AT1G74660.1 | Thale cress | mitochondrion | 16.85 | 46.08 |
| AT4G24660.2 | Thale cress | nucleus | 37.63 | 45.45 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 38.71 | 45.38 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 23.66 | 44.9 |
| KRH74513 | Soybean | nucleus | 39.43 | 43.31 |
| AT3G28917.1 | Thale cress | mitochondrion | 14.7 | 41.0 |
| PGSC0003DMT400060623 | Potato | nucleus | 35.48 | 40.74 |
| Zm00001d020774_P001 | Maize | nucleus | 39.78 | 40.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.2 | 40.4 |
| Solyc04g014260.1.1 | Tomato | nucleus | 35.48 | 40.08 |
| Os09t0466400-01 | Rice | nucleus | 39.78 | 39.78 |
| Os08t0479400-01 | Rice | nucleus | 40.86 | 39.31 |
| Zm00001d005931_P001 | Maize | nucleus | 39.78 | 38.81 |
| KRH69650 | Soybean | nucleus | 40.14 | 37.97 |
| EER96888 | Sorghum | nucleus | 40.5 | 37.42 |
| Zm00001d031840_P001 | Maize | nucleus | 41.22 | 37.34 |
| EES15144 | Sorghum | nucleus | 41.22 | 36.98 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 38.35 | 36.15 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 38.35 | 36.03 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 38.35 | 35.43 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 37.63 | 35.35 |
| AT3G50890.1 | Thale cress | nucleus | 30.11 | 33.73 |
| AT5G60480.1 | Thale cress | nucleus | 26.88 | 33.63 |
| AT1G69600.1 | Thale cress | nucleus | 28.32 | 32.64 |
| AT5G15210.1 | Thale cress | nucleus | 30.11 | 31.0 |
| AT1G14440.1 | Thale cress | nucleus | 33.69 | 30.13 |
| AT2G02540.2 | Thale cress | nucleus | 33.33 | 30.0 |
| AT2G18350.1 | Thale cress | nucleus | 27.96 | 29.77 |
| AT3G28920.1 | Thale cress | nucleus | 32.97 | 29.49 |
| AT1G75240.1 | Thale cress | nucleus | 31.9 | 28.8 |
| AT5G39760.1 | Thale cress | nucleus | 31.18 | 26.05 |
| AT5G42780.1 | Thale cress | nucleus | 22.58 | 26.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | PDB:1WH5 | EntrezGene:836666 | ProteinID:AED98048.1 | ArrayExpress:AT5G65410 |
| EnsemblPlantsGene:AT5G65410 | RefSeq:AT5G65410 | TAIR:AT5G65410 | RefSeq:AT5G65410-TAIR-G | EnsemblPlants:AT5G65410.1 | TAIR:AT5G65410.1 |
| Symbol:ATHB25 | ProteinID:BAB11563.1 | EMBL:BT002385 | EMBL:BT006304 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006629 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010371 | GO:GO:0010431 | GO:GO:0019748 | GO:GO:0042803 | GO:GO:0046872 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:IPR013087 | RefSeq:NP_201344.1 | PFAM:PD125774 | PFAM:PF04770 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| ScanProsite:PS00028 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 | UniProt:Q9FKP8 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00000AC4EE | InterPro:ZF_HD_homeobox_Cys/His_dimer | InterPro:Znf_C2H2_type | SEG:seg |
Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
Coordinates
chr5:+:26136002..26137554
Molecular Weight (calculated)
31100.2 Da
IEP (calculated)
6.360
GRAVY (calculated)
-0.992
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.