Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026812.1-P
Bra026830.1-P
Bra027455.1-P
Bra027468.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65410.1 Bra026219.1-P AT1G14440.1 16428600
AT5G65410.1 Bra026830.1-P AT1G14440.1 16428600
AT5G65410.1 Bra026812.1-P AT1G14687.1 16428600
AT5G65410.1 Bra004399.1-P AT1G69600.1 16428600
AT5G65410.1 Bra007869.1-P AT1G69600.1 16428600
AT5G65410.1 Bra008185.1-P AT1G75240.1 16428600
AT5G65410.1 Bra015857.1-P AT1G75240.1 16428600
AT5G65410.1 Bra037224.1-P AT2G18350.1 16428600
AT5G65410.1 Bra025363.1-P AT3G28920.1 16428600
AT5G65410.1 Bra039038.1-P AT3G28920.1 16428600
AT5G65410.1 Bra012882.1-P AT3G50890.1 16428600
AT5G65410.1 Bra036852.1-P AT3G50890.1 16428600
AT5G65410.1 Bra008712.1-P AT5G15210.1 16428600
AT5G65410.1 Bra025644.1-P AT5G39760.1 16428600
AT5G65410.1 Bra025644.1-P AT5G39760.1 21798944
AT5G65410.1 Bra027455.1-P AT5G42780.1 16428600
AT5G65410.1 Bra027468.1-P AT5G42950.1 16120600
AT5G65410.1 Bra024382.1-P AT5G65410.1 16428600
AT5G65410.1 Bra031859.1-P AT5G65410.1 16428600
AT5G65410.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37827 Canola nucleus 100.0 100.0
CDY33960 Canola nucleus 94.49 95.54
Bra024382.1-P Field mustard nucleus 91.54 84.98
Bra037816.1-P Field mustard nucleus 75.37 84.71
AT5G65410.1 Thale cress nucleus 85.66 83.51
GSMUA_Achr7P19060_001 Banana nucleus 36.76 48.54
Bra031051.1-P Field mustard mitochondrion 15.44 47.73
Solyc05g051420.1.1 Tomato nucleus 29.04 47.31
GSMUA_Achr6P02170_001 Banana nucleus 40.07 47.19
PGSC0003DMT400084919 Potato nucleus 30.15 46.86
GSMUA_Achr3P20390_001 Banana nucleus 35.29 46.38
Bra013822.1-P Field mustard nucleus 38.24 46.22
VIT_00s0199g00250.t01 Wine grape nucleus 40.81 45.49
Bra025688.1-P Field mustard mitochondrion 14.71 45.45
Bra010485.1-P Field mustard nucleus 34.93 45.24
GSMUA_Achr10P... Banana nucleus 37.87 44.98
GSMUA_Achr5P05500_001 Banana nucleus 39.34 44.96
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 23.9 44.22
Bra015898.1-P Field mustard mitochondrion 15.07 43.62
Bra003791.1-P Field mustard mitochondrion 15.44 43.3
Bra016538.1-P Field mustard mitochondrion 13.97 43.18
KRH74513 Soybean nucleus 39.71 42.52
Bra006657.1-P Field mustard nucleus 27.57 41.21
Zm00001d020774_P001 Maize nucleus 40.07 39.93
GSMUA_AchrUn_... Banana nucleus 36.4 39.6
PGSC0003DMT400060623 Potato nucleus 34.93 39.09
Os09t0466400-01 Rice nucleus 40.07 39.07
Os08t0479400-01 Rice nucleus 41.54 38.97
Zm00001d005931_P001 Maize nucleus 40.44 38.46
Solyc04g014260.1.1 Tomato nucleus 34.56 38.06
Bra039039.1-P Field mustard mitochondrion 13.6 37.76
Bra036852.1-P Field mustard nucleus 30.15 37.44
EER96888 Sorghum nucleus 41.18 37.09
Bra025362.1-P Field mustard mitochondrion 13.6 37.0
KRH69650 Soybean nucleus 40.07 36.95
Zm00001d031840_P001 Maize nucleus 41.54 36.69
EES15144 Sorghum nucleus 41.54 36.33
TraesCS5D01G253100.1 Wheat nucleus 38.24 35.14
TraesCS5B01G243800.1 Wheat nucleus 38.24 35.02
HORVU5Hr1G069730.1 Barley nucleus 38.6 34.77
Bra004399.1-P Field mustard nucleus 29.41 34.63
Bra007869.1-P Field mustard nucleus 29.04 34.35
TraesCS5A01G246500.1 Wheat nucleus 37.5 34.34
Bra008712.1-P Field mustard cytosol 31.25 32.32
Bra008185.1-P Field mustard nucleus 34.56 31.97
Bra026589.1-P Field mustard nucleus 34.93 31.67
Bra003759.1-P Field mustard nucleus 33.82 31.29
Bra015857.1-P Field mustard nucleus 34.56 31.13
Bra039038.1-P Field mustard nucleus 34.56 30.42
Bra026219.1-P Field mustard nucleus 34.19 30.0
Bra037224.1-P Field mustard nucleus 29.04 29.81
Bra026830.1-P Field mustard nucleus 34.19 29.62
Bra012882.1-P Field mustard nucleus 27.21 27.92
Bra025644.1-P Field mustard nucleus 32.35 27.76
Bra025363.1-P Field mustard nucleus 33.82 26.74
Bra027455.1-P Field mustard nucleus 24.63 23.34
Bra039615.1-P Field mustard cytosol 13.97 20.99
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra031859EnsemblPlants:Bra031859.1EnsemblPlants:Bra031859.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456
UniProt:M4ESS9PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF5
SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002546AC3InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg
Description
AT5G65410 (E=7e-094) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator
Coordinates
chrA02:+:27423090..27423908
Molecular Weight (calculated)
30411.7 Da
IEP (calculated)
7.019
GRAVY (calculated)
-0.867
Length
272 amino acids
Sequence
(BLAST)
001: MDFEEEINLH EEEEEDALYD SPPLPPPSRV LKASTESPDT AGTTSTGEGG FMVVHGGSSL GGGGRFRFRE CLKNQAVNIG GHAVDGCGEF MPAGIEGTIE
101: ALKCAACGCH RNFHRKESLY FHHHHAPPQQ QHHPPPPGFY RLPAPVSYRP PPSQAPPLQL ALPQRERSED RMETSSAEAG GIRKRFRTKF TAEQKERMLG
201: LAERIGWRIQ RQDDEVIQRF CQETGVPRQV LKVWLHNNKH TLGKSSSPPL HHHQNPTLPP QSSSFHHEQD QP
Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.