Factsheet for GSMUA_AchrUn_randomP03390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P13140_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr4P28310_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT5G65410.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT5G65410.1	GSMUA_Achr10P...	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr2P23010_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr3P19060_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr3P31090_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr4P07850_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr4P14910_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr6P22120_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr6P24230_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr6P27240_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr7P25600_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr8P27010_001	AT2G18350.1	16428600
AT5G65410.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT5G65410.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT5G65410.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT5G65410.1	GSMUA_Achr2P13140_001	AT5G42950.1	16120600
AT5G65410.1	GSMUA_Achr4P28310_001	AT5G42950.1	16120600
AT5G65410.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT5G65410.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT5G65410.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT5G65410.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT5G65410.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT5G65410.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05500_001	Banana	nucleus	65.2	68.49
GSMUA_Achr7P19060_001	Banana	nucleus	53.2	64.56
Solyc04g074990.2.1	Tomato	nucleus	35.6	62.24
GSMUA_Achr10P...	Banana	nucleus	56.8	62.01
GSMUA_Achr3P20390_001	Banana	nucleus	50.8	61.35
VIT_18s0001g07140.t01	Wine grape	nucleus	56.0	60.87
GSMUA_Achr6P02170_001	Banana	nucleus	56.0	60.61
VIT_00s0199g00250.t01	Wine grape	nucleus	53.2	54.51
Zm00001d020774_P001	Maize	nucleus	56.8	52.01
Os09t0466400-01	Rice	nucleus	57.6	51.61
GSMUA_AchrUn_...	Banana	cytosol	18.8	50.54
PGSC0003DMT400033624	Potato	nucleus	48.0	50.0
TraesCS5D01G253100.1	Wheat	nucleus	58.4	49.32
TraesCS5B01G243800.1	Wheat	nucleus	58.4	49.16
TraesCS5A01G246500.1	Wheat	nucleus	58.0	48.82
KRH45571	Soybean	cytosol, nucleus	38.0	48.72
EER96888	Sorghum	nucleus	58.8	48.68
KRH74513	Soybean	nucleus	48.8	48.03
Solyc05g051420.1.1	Tomato	nucleus	32.0	47.9
Zm00001d005931_P001	Maize	nucleus	54.8	47.9
KRH45572	Soybean	nucleus	37.6	47.47
KRH45573	Soybean	nucleus	37.6	47.47
PGSC0003DMT400084919	Potato	nucleus	33.2	47.43
HORVU5Hr1G069730.1	Barley	nucleus	57.2	47.35
KRG99446	Soybean	nucleus	46.0	46.0
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	26.0	44.22
PGSC0003DMT400060623	Potato	nucleus	42.8	44.03
GSMUA_Achr6P17420_001	Banana	nucleus	36.4	43.96
Solyc04g014260.1.1	Tomato	nucleus	43.2	43.72
KRG90215	Soybean	cytosol	35.6	41.98
KRH69650	Soybean	nucleus	49.2	41.69
GSMUA_Achr1P13300_001	Banana	nucleus	36.8	40.71
KRG90132	Soybean	cytosol	33.2	40.49
GSMUA_Achr6P28870_001	Banana	nucleus	36.4	40.27
GSMUA_Achr9P08090_001	Banana	nucleus	38.0	39.42
GSMUA_Achr10P...	Banana	nucleus	38.0	39.26
GSMUA_Achr6P30650_001	Banana	mitochondrion	14.8	38.95
KRH45574	Soybean	cytosol	40.4	38.7
CDY54719	Canola	nucleus	37.2	38.59
GSMUA_Achr3P16680_001	Banana	nucleus	35.6	38.2
Bra037816.1-P	Field mustard	nucleus	36.8	38.02
CDX81284	Canola	nucleus	38.0	37.25
CDY33960	Canola	nucleus	39.6	36.8
KRH71953	Soybean	nucleus	37.6	36.72
KRG90210	Soybean	nucleus	37.6	36.72
CDY37827	Canola	nucleus	39.6	36.4
Bra031859.1-P	Field mustard	nucleus	39.6	36.4
AT5G65410.1	Thale cress	nucleus	40.4	36.2
KRH71954	Soybean	nucleus	34.4	34.82
CDY14559	Canola	nucleus	40.8	34.81
KRG90213	Soybean	nucleus	35.2	34.51
Bra024382.1-P	Field mustard	nucleus	40.4	34.47
KRG90211	Soybean	cytosol	35.2	34.24
GSMUA_Achr10P...	Banana	nucleus	33.6	31.7
GSMUA_Achr6P02700_001	Banana	nucleus	29.6	31.09
GSMUA_Achr3P31090_001	Banana	nucleus	34.8	30.74
GSMUA_Achr8P27010_001	Banana	nucleus	36.4	28.35
GSMUA_Achr2P23010_001	Banana	nucleus	32.8	28.18
GSMUA_Achr7P25600_001	Banana	nucleus	37.6	27.09
GSMUA_Achr4P07850_001	Banana	nucleus	35.6	26.89
GSMUA_Achr10P...	Banana	nucleus	28.0	26.82
GSMUA_Achr3P19060_001	Banana	nucleus	24.8	25.83
GSMUA_Achr4P14910_001	Banana	nucleus	34.0	25.76
GSMUA_Achr6P24230_001	Banana	nucleus	22.4	25.11
GSMUA_Achr6P27240_001	Banana	plastid	35.6	23.18
GSMUA_Achr6P22120_001	Banana	nucleus	36.4	22.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSMUA_AchrUn_randomG03390_001	EnsemblPlants:GSMUA_AchrUn_randomP03390_001	EnsemblPlants:GSMUA_AchrUn_randomT03390_001	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M0U601	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF25
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000295E453	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

ZF-HD protein dimerisation region containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03390_001]

Coordinates

chrchrUn_random:+:16972716..16973799

Molecular Weight (calculated)

26529.1 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.588

Length

250 amino acids

Sequence
(BLAST)

001: MDFEDHDEAD EEMGLLAISG YDNPMPNSAR GGAGGGGDKM GGSAGGAEEA AVSGSGKRKV GGDGGGWGVR YRECLKNHAV AIGGHAVDGC SEFLAAGEED
101: TLDALRCAAC SCHRNFHRRE EEGGGGAAVL ETVGCYHRFS PFYRTPAGYL HHRHHMVVAA DSNPMMGAGG LVGVGGATGT SGSGGHRKRS RTKFTQEQKE
201: KMLAFAERVG WRIQKHDEAA VQQFCGETCV DRHVLKVWMH NNKQTLGKKP

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.