Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P02700_001 | Banana | nucleus | 64.75 | 71.01 |
| Os09t0414600-02 | Rice | nucleus | 24.52 | 58.72 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 27.2 | 38.38 |
| AT5G15210.1 | Thale cress | nucleus | 39.85 | 38.38 |
| CDX69541 | Canola | nucleus | 38.31 | 38.02 |
| Bra008712.1-P | Field mustard | cytosol | 37.93 | 37.64 |
| PGSC0003DMT400080288 | Potato | nucleus | 39.85 | 36.24 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 23.75 | 35.84 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 31.42 | 35.65 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 27.97 | 35.44 |
| Solyc05g007580.1.1 | Tomato | nucleus | 40.23 | 35.35 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 27.59 | 34.78 |
| HORVU1Hr1G013140.1 | Barley | cytosol | 9.96 | 34.67 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 29.5 | 34.07 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 29.12 | 33.63 |
| CDX85059 | Canola | nucleus | 30.27 | 33.19 |
| Os08t0438400-01 | Rice | plastid | 42.53 | 32.84 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 25.67 | 32.37 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.49 | 32.26 |
| GSMUA_Achr10P... | Banana | nucleus | 27.97 | 31.88 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 28.35 | 31.76 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 11.49 | 31.58 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 29.12 | 31.54 |
| Zm00001d032175_P001 | Maize | cytosol | 44.83 | 31.37 |
| KRH74865 | Soybean | nucleus | 35.25 | 31.08 |
| KRH70724 | Soybean | nucleus | 34.48 | 30.93 |
| KRG89637 | Soybean | nucleus | 21.46 | 30.77 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 26.82 | 30.3 |
| Zm00001d050443_P001 | Maize | nucleus | 42.15 | 30.05 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 27.2 | 29.83 |
| GSMUA_Achr10P... | Banana | nucleus | 27.59 | 29.75 |
| EES15050 | Sorghum | cytosol | 44.44 | 29.74 |
| OQU86730 | Sorghum | nucleus | 29.5 | 29.06 |
| KRH50585 | Soybean | nucleus | 39.85 | 29.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.82 | 28.0 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 29.12 | 26.57 |
| GSMUA_Achr10P... | Banana | nucleus | 26.82 | 26.42 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 29.12 | 26.21 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 29.12 | 26.12 |
| HORVU5Hr1G065740.1 | Barley | nucleus | 37.93 | 25.65 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 37.16 | 25.33 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 37.55 | 25.13 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 37.16 | 25.06 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 26.82 | 24.73 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 28.74 | 23.36 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 27.59 | 21.75 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 28.74 | 21.61 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 26.44 | 20.91 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 17.62 | 20.63 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 29.12 | 19.79 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 18.01 | 19.58 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 27.2 | 17.84 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr10G29790_001 | EnsemblPlants:GSMUA_Achr10P29790_001 | EnsemblPlants:GSMUA_Achr10T29790_001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
| InterPro:IPR013087 | UniProt:M0RMK3 | PFAM:PD125774 | PFAM:PF04770 | ScanProsite:PS00028 | PFscan:PS51523 |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF29 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002957AB8 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G29790_001]
Coordinates
chr10:-:32166296..32167207
Molecular Weight (calculated)
28378.0 Da
IEP (calculated)
7.244
GRAVY (calculated)
-0.897
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHTTKVAEP ETEGKTLSFP NGTLRKHHQR QPATAVEEFL YRECLKNHAA SLGGHALDGC GEFMHSPAAD PADPSSLRCV ACGCHRNFHR RLPDPLHHRH
101: RLHDREGEDE RNREGGDEEE PIVTPIAAVA AATPMAADVA QPRKRFRTRF TPGQKERMQE LSERLGWRMQ KRDEGQVEEC CRQIGVDKGV FKVWMHNNKH
201: AFFGQARKGG AGGGCGGSRT GNGVDGGDVV GRVEETSHSA NGVDDSGGGN GHAMNGSSSS S
101: RLHDREGEDE RNREGGDEEE PIVTPIAAVA AATPMAADVA QPRKRFRTRF TPGQKERMQE LSERLGWRMQ KRDEGQVEEC CRQIGVDKGV FKVWMHNNKH
201: AFFGQARKGG AGGGCGGSRT GNGVDGGDVV GRVEETSHSA NGVDDSGGGN GHAMNGSSSS S
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.