Factsheet for Solyc05g007580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc04g014260.1.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1
Solyc08g075880.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT5G15210.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT5G15210.1	Solyc08g075880.2.1	AT2G18196.1	18974936
AT5G15210.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT5G15210.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT5G15210.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT5G15210.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT5G15210.1	Solyc05g007580.1.1	AT5G15210.1	21245844
AT5G15210.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT5G15210.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT5G15210.1	Solyc02g067310.2.1	AT5G39760.1	21245844
AT5G15210.1	Solyc02g067320.1.1	AT5G39760.1	21245844
AT5G15210.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT5G15210.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080288	Potato	nucleus	90.24	93.38
Os09t0414600-02	Rice	nucleus	18.18	49.54
VIT_01s0026g02460.t01	Wine grape	nucleus	37.04	47.83
Solyc02g067310.2.1	Tomato	nucleus	46.13	46.92
Solyc04g074990.2.1	Tomato	nucleus	21.89	45.45
Solyc05g051420.1.1	Tomato	nucleus	25.25	44.91
AT5G15210.1	Thale cress	nucleus	40.4	44.28
Solyc02g067320.1.1	Tomato	nucleus	48.48	43.5
Solyc03g116070.1.1	Tomato	mitochondrion	12.12	43.37
KRH74865	Soybean	nucleus	43.1	43.24
Solyc03g098060.1.1	Tomato	nucleus	25.93	43.02
Bra008712.1-P	Field mustard	cytosol	37.71	42.59
GSMUA_Achr6P02700_001	Banana	nucleus	34.01	42.44
CDX69541	Canola	nucleus	37.37	42.21
KRH70724	Soybean	nucleus	41.08	41.92
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	14.14	41.18
Solyc03g061620.1.1	Tomato	cytosol	12.12	40.91
GSMUA_Achr10P...	Banana	nucleus	35.35	40.23
KRG89637	Soybean	nucleus	24.58	40.11
Solyc02g087970.1.1	Tomato	mitochondrion	12.12	40.0
TraesCS3A01G308700.1	Wheat	nucleus	24.58	39.46
CDX85059	Canola	nucleus	30.98	38.66
HORVU1Hr1G013140.1	Barley	cytosol	9.43	37.33
TraesCS1D01G064300.1	Wheat	mitochondrion	21.55	36.99
KRH50585	Soybean	nucleus	43.77	36.31
Os08t0438400-01	Rice	plastid	38.05	33.43
Solyc04g014260.1.1	Tomato	nucleus	27.27	32.79
Zm00001d005757_P001	Maize	nucleus	38.72	31.86
Zm00001d020460_P001	Maize	nucleus	39.06	31.35
KXG35632	Sorghum	nucleus	39.73	30.97
Solyc01g103820.1.1	Tomato	cytosol	9.76	30.85
Solyc01g102980.2.1	Tomato	nucleus	29.63	30.34
Zm00001d032175_P001	Maize	cytosol	37.37	29.76
Zm00001d050443_P001	Maize	nucleus	36.03	29.23
OQU86730	Sorghum	nucleus	25.59	28.68
TraesCS1A01G087700.1	Wheat	nucleus	27.61	28.67
Solyc05g018740.1.1	Tomato	cytosol	11.45	28.57
TraesCS1B01G106800.1	Wheat	nucleus	27.61	28.28
TraesCS5A01G227100.1	Wheat	nucleus	36.36	28.2
TraesCS5D01G234600.1	Wheat	nucleus	36.36	27.91
TraesCS5B01G225700.1	Wheat	nucleus	36.36	27.69
EES15050	Sorghum	cytosol	36.36	27.69
HORVU5Hr1G065740.1	Barley	nucleus	35.69	27.46
Solyc02g085160.1.1	Tomato	nucleus	26.6	26.96
Solyc04g080490.2.1	Tomato	nucleus	26.26	26.9
Solyc01g103810.1.1	Tomato	cytosol	10.44	26.72
Solyc05g020000.1.1	Tomato	cytosol	10.44	26.05
Solyc09g089550.2.1	Tomato	nucleus	23.23	8.57

Protein Annotations

EnsemblPlants:Solyc05g007580.1.1	EnsemblPlantsGene:Solyc05g007580.1	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF28	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002765CAF	UniProt:K4BWT3	MapMan:15.5.3.13	:

Description

No Description!

Coordinates

chr5:-:2120151..2121044

Molecular Weight (calculated)

32815.9 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.926

Length

297 amino acids

Sequence
(BLAST)

001: MELTYSINPT PTPSSTKTPD SEVDTPPLIK PLSFTNGNNH HSHHNQSPPC TAVIYKECLK NHAASIGGHA VDGCGEFMPS PESTPSDPIS LKCAACGCHR
101: NFHRREPSDD SSPPAHFIDF RRHIFPPIKR FSPSPTPSPS LSPSLSPPPL PSLFQPQPVT PTGLKSENPN GRKRFRTKFT AEQKEKMHSF SEKLGWKLQK
201: CDEAAVDEFC NEIGVGKGVL RVWMHNNKNT FGKKDYQISN NSSRDHSFEN KNGFNINGTA SSNEEEDQHR NNNNDNSTTS NCELHLHIST NASSSSS

Best Arabidopsis Sequence Match ( AT1G69600.1 )
(BLAST)

001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS

Arabidopsis Description

ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.