Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G227100.1 | Wheat | nucleus | 96.64 | 97.65 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 96.64 | 95.9 |
| HORVU5Hr1G065740.1 | Barley | nucleus | 91.73 | 91.97 |
| KXG35632 | Sorghum | nucleus | 62.53 | 63.52 |
| Zm00001d020460_P001 | Maize | nucleus | 60.47 | 63.24 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 19.9 | 44.51 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 25.58 | 41.6 |
| AT5G15210.1 | Thale cress | nucleus | 27.13 | 38.75 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 22.48 | 37.83 |
| GSMUA_Achr10P... | Banana | nucleus | 25.06 | 37.16 |
| PGSC0003DMT400080288 | Potato | nucleus | 27.13 | 36.59 |
| Bra008712.1-P | Field mustard | cytosol | 24.81 | 36.5 |
| Solyc05g007580.1.1 | Tomato | nucleus | 27.91 | 36.36 |
| CDX69541 | Canola | nucleus | 24.55 | 36.12 |
| KRH70724 | Soybean | nucleus | 27.13 | 36.08 |
| KRH74865 | Soybean | nucleus | 27.39 | 35.81 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 21.71 | 33.6 |
| CDX85059 | Canola | nucleus | 19.9 | 32.35 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 7.75 | 31.91 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 19.38 | 31.78 |
| TraesCS2D01G303900.1 | Wheat | nucleus | 22.22 | 29.35 |
| KRG89637 | Soybean | nucleus | 13.7 | 29.12 |
| KRH50585 | Soybean | nucleus | 26.61 | 28.77 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 21.45 | 28.04 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 6.72 | 27.96 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 23.51 | 23.39 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 21.96 | 18.28 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G234600.1 | EnsemblPlantsGene:TraesCS5D01G234600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF48 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:342174499..342175963
Molecular Weight (calculated)
40513.8 Da
IEP (calculated)
8.594
GRAVY (calculated)
-0.517
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMDVKYRP ALYPNGSVKK LRQAAAVQPP APPAAVEAVP TYKECLKNHA AAIGAHAVDG CGEWMPVVEL NTADPASYKC AACGCHRNFH RLVMVEGSPP
101: PPPPPPPALL PAPPMPMPMP ATVLHGLPQR GHGQETPDDR LPGVDGDDSD SDSDGSEYDD ERSVSPPQHP PPAHLPAPVA QQPPSYISSA PHPHMLLSLN
201: SSALGAPQGQ SRLPAQLSPA TAPPPHGMMP ARKRFRTKFT AEQKQRMQEL SERLGWRLQK RDEGVVDEWC RDIGVSKGVF KVWMHNNKHN YLGGHSARRS
301: ASAAASSAAT TPTAPAAGGP FRLAPASPAP GAPFNPSASH SSPAPTATGF NMNGTASSAS TATTTATPTP IFAAGRKLNG ASSPQSA
101: PPPPPPPALL PAPPMPMPMP ATVLHGLPQR GHGQETPDDR LPGVDGDDSD SDSDGSEYDD ERSVSPPQHP PPAHLPAPVA QQPPSYISSA PHPHMLLSLN
201: SSALGAPQGQ SRLPAQLSPA TAPPPHGMMP ARKRFRTKFT AEQKQRMQEL SERLGWRLQK RDEGVVDEWC RDIGVSKGVF KVWMHNNKHN YLGGHSARRS
301: ASAAASSAAT TPTAPAAGGP FRLAPASPAP GAPFNPSASH SSPAPTATGF NMNGTASSAS TATTTATPTP IFAAGRKLNG ASSPQSA
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.