Factsheet for TraesCS1B01G215100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G087700.1
TraesCS1B01G106800.1
TraesCS1D01G064300.1
TraesCS3A01G308700.1
TraesCS5A01G227100.1
TraesCS5B01G225700.1
TraesCS5D01G234600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	TraesCS1A01G087700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS1B01G106800.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS1D01G064300.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS3A01G308700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5A01G227100.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5B01G225700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5D01G234600.1	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G200700.1	Wheat	cytosol, plastid	95.94	96.92
TraesCS1D01G204100.1	Wheat	cytosol, plastid	95.94	95.94
Os10t0537400-00	Rice	cytosol	69.04	73.51
GSMUA_Achr11P...	Banana	cytosol	42.13	62.88
KXG39011	Sorghum	cytosol	63.45	60.1
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	41.12	57.04
TraesCS4B01G348900.1	Wheat	plastid	49.24	49.74
GSMUA_Achr11P...	Banana	cytosol	46.19	49.19
PGSC0003DMT400079287	Potato	cytosol	23.86	48.45
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	45.69	47.12
GSMUA_Achr1P00790_001	Banana	cytosol	46.7	46.94
KRG92555	Soybean	cytosol	42.13	46.63
KRH34236	Soybean	cytosol	41.12	45.51
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	40.1	44.13
AT2G18196.1	Thale cress	plastid	39.59	43.82
AT4G10465.1	Thale cress	plastid	40.61	43.72
CDY13354	Canola	cytosol	39.09	43.26
Bra028528.1-P	Field mustard	cytosol	39.09	43.26
CDX67533	Canola	cytosol	39.09	43.26
PGSC0003DMT400012844	Potato	plastid	40.1	42.93
Bra037919.1-P	Field mustard	plastid	39.59	42.86
CDX99542	Canola	plastid	39.59	42.86
CDX86861	Canola	plastid	39.59	42.86
PGSC0003DMT400079324	Potato	endoplasmic reticulum	39.09	42.78
CDX85985	Canola	mitochondrion	25.89	42.5
TraesCS5B01G242000.1	Wheat	cytosol	27.41	35.53
TraesCS6B01G287000.1	Wheat	mitochondrion	27.41	35.53
TraesCS3B01G238100.1	Wheat	cytosol	17.26	34.0
TraesCS2B01G304100.1	Wheat	cytosol	25.89	33.77
TraesCS2B01G186900.1	Wheat	cytosol	27.41	33.33
TraesCS4B01G105100.1	Wheat	mitochondrion, plastid	24.87	33.11
TraesCS5B01G191700.1	Wheat	cytosol	25.38	31.06
TraesCS2B01G077100.1	Wheat	cytosol, plastid	23.86	30.32
TraesCS3B01G329600.1	Wheat	cytosol	21.83	29.05
TraesCS6B01G059000.1	Wheat	cytosol	22.34	27.67
TraesCS7B01G237800.1	Wheat	cytosol	23.86	27.65
TraesCS6B01G332000.2	Wheat	cytosol	22.34	27.16
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	20.81	25.47

Protein Annotations

EnsemblPlants:TraesCS1B01G215100.1	EnsemblPlantsGene:TraesCS1B01G215100	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PANTHER:PTHR22814	PANTHER:PTHR22814:SF141	PFAM:PF00403	PFscan:PS50846	SEG:seg	SUPFAM:SSF55008
TIGR:cd00371	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:390467231..390468494

Molecular Weight (calculated)

21496.4 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.564

Length

197 amino acids

Sequence
(BLAST)

001: MADLVSDVLL SFFCCCFYPP GGHHDTRHYR GHPAGRSSVH HHHHGAAGRT VASRSRPALS LQTVELKVRM CCDGCERAVM QSLVNLRGVD SVEVDAGTGK
101: VRVTGYVERG KVLREVRRRS GKKAEFWPSG GTPLRFASPG GCFGGGCGEP YRDTYSYHRR GYGDGGDRHG RTRRPARGGD AVSNMFNDDD VNACAIM

Best Arabidopsis Sequence Match ( AT4G10465.1 )
(BLAST)

001: MSSLIVKSLG SIVSIIARIF FFRRSRPVSN PRTTAHISYF RMSRKRPLSL QTVELKVRMC CTGCVRIVRN AISKLRGVDS VEVDKELGRV RVVGYVDRNK
101: VLKAVRRAGK RAEFSPYPEP PLYFTSTQNY FVDPSKEFKE SYNYYRHGYN GTEQHGNIPV GSRGDDRVSN MFNDDNVNAC RLM

Arabidopsis Description

HIPP44Heavy metal-associated isoprenylated plant protein 44 [Source:UniProtKB/Swiss-Prot;Acc:F4JMB8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.