Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G215100.1 | Wheat | cytosol, plastid | 95.94 | 95.94 |
| TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 94.42 | 95.38 |
| Os10t0537400-00 | Rice | cytosol | 69.04 | 73.51 |
| GSMUA_Achr11P... | Banana | cytosol | 41.62 | 62.12 |
| KXG39011 | Sorghum | cytosol | 62.44 | 59.13 |
| VIT_02s0025g03010.t01 | Wine grape | cytosol, mitochondrion | 41.12 | 57.04 |
| TraesCS4D01G343300.1 | Wheat | plastid | 48.73 | 49.23 |
| GSMUA_Achr11P... | Banana | cytosol | 45.69 | 48.65 |
| PGSC0003DMT400079287 | Potato | cytosol | 23.86 | 48.45 |
| KRG92555 | Soybean | cytosol | 42.64 | 47.19 |
| GSMUA_Achr2P10220_001 | Banana | mitochondrion, plastid | 45.18 | 46.6 |
| KRH34236 | Soybean | cytosol | 41.62 | 46.07 |
| GSMUA_Achr1P00790_001 | Banana | cytosol | 45.18 | 45.41 |
| AT2G18196.1 | Thale cress | plastid | 39.59 | 43.82 |
| Solyc08g075880.2.1 | Tomato | endoplasmic reticulum, plastid | 39.59 | 43.58 |
| CDY13354 | Canola | cytosol | 39.09 | 43.26 |
| CDX67533 | Canola | cytosol | 39.09 | 43.26 |
| Bra028528.1-P | Field mustard | cytosol | 39.09 | 43.26 |
| PGSC0003DMT400012844 | Potato | plastid | 40.1 | 42.93 |
| AT4G10465.1 | Thale cress | plastid | 39.59 | 42.62 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 38.58 | 42.22 |
| CDX99542 | Canola | plastid | 38.58 | 41.76 |
| Bra037919.1-P | Field mustard | plastid | 38.58 | 41.76 |
| CDX86861 | Canola | plastid | 38.58 | 41.76 |
| CDX85985 | Canola | mitochondrion | 25.38 | 41.67 |
| TraesCS6D01G240700.1 | Wheat | mitochondrion | 27.41 | 36.0 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 26.4 | 34.21 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 25.38 | 33.11 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 25.38 | 33.11 |
| TraesCS2D01G168000.1 | Wheat | cytosol | 26.9 | 32.72 |
| TraesCS4D01G102000.1 | Wheat | mitochondrion, plastid | 24.37 | 32.43 |
| TraesCS5D01G199500.1 | Wheat | cytosol | 24.87 | 30.62 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 23.35 | 29.68 |
| TraesCS3D01G295000.1 | Wheat | cytosol | 21.32 | 28.38 |
| TraesCS6D01G282300.1 | Wheat | cytosol, mitochondrion | 22.84 | 27.95 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 21.83 | 27.04 |
| TraesCS7D01G333800.1 | Wheat | cytosol | 23.35 | 26.9 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 21.32 | 26.09 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G204100.1 | EnsemblPlantsGene:TraesCS1D01G204100 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF141 | PFAM:PF00403 | SEG:seg | SUPFAM:SSF55008 | TIGR:cd00371 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:288938651..288939370
Molecular Weight (calculated)
21556.4 Da
IEP (calculated)
9.338
GRAVY (calculated)
-0.609
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLVSDVLL SFFCCCFYPP GGHHDTRHYR GHPAGRNSAH RHHHGAAGRT VPSRSRPALS FQTVELKVRM CCDGCERAVM QSLVNLRGVD SVEVDAGTGN
101: VRVTGYVERG KVLREVRRRS GKKAEFWPSG GTPLRFASPG GCFGGGGGEP YRDTYSYHRR GYGDVGDRHG RTRRPARGGD AVSNMFNDDD VNACAIM
101: VRVTGYVERG KVLREVRRRS GKKAEFWPSG GTPLRFASPG GCFGGGGGEP YRDTYSYHRR GYGDVGDRHG RTRRPARGGD AVSNMFNDDD VNACAIM
001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
Arabidopsis Description
HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.