CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86861	Canola	plastid	100.0	100.0
Bra037919.1-P	Field mustard	plastid	99.45	99.45
AT4G10465.1	Thale cress	plastid	89.56	89.07
CDX85985	Canola	mitochondrion	54.4	82.5
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	57.69	73.94
PGSC0003DMT400079287	Potato	cytosol	37.36	70.1
GSMUA_Achr11P...	Banana	cytosol	48.35	66.67
KRG92555	Soybean	cytosol	64.29	65.73
KRH34236	Soybean	cytosol	63.74	65.17
CDX67533	Canola	cytosol	61.54	62.92
CDY13354	Canola	cytosol	61.54	62.92
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	58.79	59.78
PGSC0003DMT400079324	Potato	endoplasmic reticulum	58.79	59.44
GSMUA_Achr11P...	Banana	cytosol	56.59	55.68
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	55.49	52.88
Os03t0120400-01	Rice	plastid	56.04	52.85
GSMUA_Achr1P00790_001	Banana	cytosol	56.04	52.04
TraesCS4B01G348900.1	Wheat	plastid	54.95	51.28
TraesCS4D01G343300.1	Wheat	plastid	54.95	51.28
TraesCS5A01G516900.1	Wheat	plastid	54.95	51.28
EER92967	Sorghum	plastid	53.85	50.52
Zm00001d027405_P001	Maize	plastid	51.65	48.45
Os10t0537400-00	Rice	cytosol	45.6	44.86
TraesCS1A01G200700.1	Wheat	cytosol, plastid	42.86	40.0
TraesCS1B01G215100.1	Wheat	cytosol, plastid	42.86	39.59
CDX85452	Canola	cytosol	31.87	38.93
CDY55938	Canola	cytosol	31.87	38.93
TraesCS1D01G204100.1	Wheat	cytosol, plastid	41.76	38.58
KXG39011	Sorghum	cytosol	43.41	37.98
CDY27183	Canola	cytosol	32.42	37.34
CDY38431	Canola	cytosol	30.22	36.91
CDX72773	Canola	cytosol	30.22	36.67
CDX96299	Canola	cytosol	30.22	36.67
CDY16919	Canola	cytosol	29.67	36.24
CDY08096	Canola	cytosol	27.47	36.23
CDY05886	Canola	cytosol	27.47	36.23
CDX72102	Canola	cytosol	31.32	36.08
CDX76017	Canola	cytosol	30.77	35.44
HORVU4Hr1G085090.2	Barley	plastid	55.49	35.31
CDY21408	Canola	cytosol	29.67	35.29
CDY12499	Canola	cytosol	29.67	35.29
CDY04750	Canola	cytosol	29.67	35.29
CDY25762	Canola	cytosol	29.67	35.29
CDY47384	Canola	cytosol, extracellular	30.77	35.22
CDY42647	Canola	cytosol	29.67	34.18
CDY41999	Canola	cytosol	29.67	34.18
CDX86196	Canola	cytosol	29.67	34.18
CDY65011	Canola	cytosol	27.47	32.68
CDX90282	Canola	cytosol	27.47	32.68
CDY12089	Canola	cytosol	27.47	32.68
CDX72748	Canola	cytosol	27.47	32.68
CDY06206	Canola	cytosol	26.92	32.45
CDX69108	Canola	cytosol	26.37	31.37
CDY52653	Canola	cytosol	26.37	31.37
CDX94648	Canola	cytosol	23.63	30.5
CDY57455	Canola	cytosol	23.63	30.5
CDX75144	Canola	cytosol	20.88	30.16
CDY36193	Canola	cytosol	24.73	30.0
CDY17504	Canola	cytosol	25.27	29.87
CDX76309	Canola	cytosol	24.73	29.22
CDX88005	Canola	cytosol	22.53	28.28
CDY07874	Canola	cytosol	22.53	28.28
CDY09978	Canola	cytosol	29.67	18.49

Protein Annotations

EnsemblPlants:CDX99542	EnsemblPlantsGene:GSBRNA2T00107979001	Gene3D:3.30.70.100	GO:A0A078DC77	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF280	PFAM:PF00403	PFscan:PS50846	ProteinID:CDX99542
ProteinID:CDX99542.1	SEG:seg	SUPFAM:SSF55008	UniParc:UPI0004EF31B5	MapMan:35.1	:

Description

BnaC09g24500D

Coordinates

chrLK031911:+:709778..711175

Molecular Weight (calculated)

21010.3 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.547

Length

182 amino acids

Sequence
(BLAST)

001: MSTFIAKSLG SIVSIVARFF SFRRRPKSNT RPTTHISYFR MSKKRPLSLQ TVDLKVRMCC TGCVRIVRKA ISKLRGVDSV EVEREMGRVR VVGYVDRNKV
101: LKAVRRAGKR AEFWPYPEPP LYFTSTQNYF VDPSKEFKES YNYYRHGYNG TEQHGNIPVG SRGDDRVSNM FNDDNVNACS VM

Best Arabidopsis Sequence Match ( AT4G10465.1 )
(BLAST)

001: MSSLIVKSLG SIVSIIARIF FFRRSRPVSN PRTTAHISYF RMSRKRPLSL QTVELKVRMC CTGCVRIVRN AISKLRGVDS VEVDKELGRV RVVGYVDRNK
101: VLKAVRRAGK RAEFSPYPEP PLYFTSTQNY FVDPSKEFKE SYNYYRHGYN GTEQHGNIPV GSRGDDRVSN MFNDDNVNAC RLM

Arabidopsis Description

HIPP44Heavy metal-associated isoprenylated plant protein 44 [Source:UniProtKB/Swiss-Prot;Acc:F4JMB8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.