CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89227
CDX92839
CDX95914
CDY01760
CDY19024
CDY28566
CDY29860
CDY44079

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	CDX95914	AT1G69600.1	18974936
AT4G38580.1	CDY01760	AT1G69600.1	18974936
AT4G38580.1	CDY28566	AT1G69600.1	18974936
AT4G38580.1	CDY44079	AT1G69600.1	18974936
AT4G38580.1	CDX89227	AT4G27780.1	18823312
AT4G38580.1	CDX92839	AT4G27780.1	18823312
AT4G38580.1	CDY19024	AT4G27780.1	18823312
AT4G38580.1	CDY29860	AT4G27780.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033570.1-P	Field mustard	cytosol	100.0	100.0
CDX90282	Canola	cytosol	98.04	98.04
CDX72748	Canola	cytosol	96.73	96.73
CDY12089	Canola	cytosol	96.73	96.73
AT4G38580.1	Thale cress	cytosol	96.08	96.08
Solyc01g111600.2.1	Tomato	nucleus	84.97	84.97
PGSC0003DMT400015784	Potato	cytosol	84.31	84.31
VIT_03s0038g02440.t01	Wine grape	cytosol	82.35	81.29
CDY52653	Canola	cytosol	73.2	73.2
CDX69108	Canola	cytosol	72.55	72.55
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	73.2	72.26
CDX76309	Canola	cytosol	71.24	70.78
CDY17504	Canola	cytosol	70.59	70.13
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	69.28	68.39
CDX88005	Canola	cytosol	64.05	67.59
CDY07874	Canola	cytosol	64.05	67.59
EES11880	Sorghum	cytosol	65.36	64.52
TraesCS2D01G063000.1	Wheat	cytosol, plastid	65.36	64.52
TraesCS2A01G064900.1	Wheat	nucleus	65.36	64.52
TraesCS2B01G077100.1	Wheat	cytosol, plastid	65.36	64.52
Zm00001d004138_P001	Maize	cytosol	65.36	64.52
Os04t0244800-01	Rice	plasma membrane	64.71	63.87
TraesCS6B01G059000.1	Wheat	cytosol	63.4	61.01
TraesCS6A01G043000.1	Wheat	cytosol	63.4	61.01
TraesCS6D01G049600.1	Wheat	cytosol	62.75	60.38
Os03t0156600-01	Rice	cytosol	58.82	58.06
EER92834	Sorghum	cytosol	57.52	56.41
CDX96299	Canola	cytosol	54.25	55.33
CDX72773	Canola	cytosol	54.25	55.33
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	58.17	55.28
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	58.17	55.28
HORVU7Hr1G090970.1	Barley	mitochondrion	56.86	54.72
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	56.86	54.04
Zm00001d027720_P001	Maize	cytosol	54.9	53.85
CDY12499	Canola	cytosol	52.94	52.94
CDY25762	Canola	cytosol	52.29	52.29
CDY21408	Canola	cytosol	52.29	52.29
Os01t0507700-01	Rice	plasma membrane	50.98	51.66
CDY04750	Canola	cytosol	51.63	51.63
EES14354	Sorghum	cytosol	50.33	50.99
Zm00001d034978_P001	Maize	cytosol	50.33	50.99
TraesCS2B01G304100.1	Wheat	cytosol	49.67	50.33
TraesCS2A01G287200.1	Wheat	cytosol	49.67	50.33
TraesCS2D01G285700.1	Wheat	cytosol	49.67	50.33
TraesCS5A01G244000.1	Wheat	cytosol	49.02	49.34
TraesCS5D01G250700.1	Wheat	cytosol	49.02	49.34
CDX75144	Canola	cytosol	40.52	49.21
TraesCS3A01G206100.1	Wheat	cytosol	48.37	49.01
TraesCS5B01G242000.1	Wheat	cytosol	48.37	48.68
HORVU5Hr1G069380.2	Barley	cytosol	48.37	48.68
TraesCS3D01G209500.1	Wheat	cytosol	47.71	48.34
Zm00001d052760_P001	Maize	cytosol	47.71	48.34
HORVU3Hr1G049780.1	Barley	cytosol	47.71	48.34
CDX86196	Canola	cytosol	48.37	46.84
CDY41999	Canola	cytosol	48.37	46.84
CDY42647	Canola	cytosol	48.37	46.84
CDX85452	Canola	cytosol	45.1	46.31
CDY38431	Canola	cytosol	45.1	46.31
CDY55938	Canola	cytosol	45.1	46.31
CDY16919	Canola	cytosol	44.44	45.64
CDY36193	Canola	cytosol	43.14	44.0
TraesCS3B01G238100.1	Wheat	cytosol	28.1	43.0
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	61.44	41.78
CDY08096	Canola	cytosol	30.07	33.33
CDY05886	Canola	cytosol	30.07	33.33
CDY27183	Canola	cytosol	32.03	31.01
CDY57455	Canola	cytosol	28.1	30.5
CDX94648	Canola	cytosol	28.1	30.5
CDX72102	Canola	cytosol	31.37	30.38
CDX76017	Canola	cytosol	31.37	30.38
CDY47384	Canola	cytosol, extracellular	31.37	30.19
HORVU2Hr1G011060.1	Barley	nucleus, plastid	28.76	28.39
CDX99542	Canola	plastid	32.68	27.47
CDX86861	Canola	plastid	32.68	27.47
CDY06206	Canola	cytosol	26.8	27.15
CDX67533	Canola	cytosol	30.07	25.84
CDY13354	Canola	cytosol	30.07	25.84
CDX85985	Canola	mitochondrion	16.99	21.67
CDY09978	Canola	cytosol	28.76	15.07

Protein Annotations

EnsemblPlants:CDY65011	EnsemblPlantsGene:GSBRNA2T00044011001	Gene3D:3.30.70.100	GO:A0A078JH36	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF14	PFAM:PF00403	ProteinID:CDY65011	ProteinID:CDY65011.1
SUPFAM:SSF55008	UniParc:UPI000253F94D	UniProt:A0A078JH36	MapMan:35.1	:	:

Description

BnaA06g40860DBnaA06g40860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH36]

Coordinates

chrLK034623:+:24844..27011

Molecular Weight (calculated)

17024.5 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.441

Length

153 amino acids

Sequence
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRRQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVSLEP KAHKVTVVGY VDPNKVVSRM AHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRA DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VLM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.