CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72748
CDX82214
CDX82392
CDX90282
CDX92094
CDX95906
CDY12089
CDY19582
CDY28337
CDY32408
CDY34977
CDY50075
CDY54628
CDY65011

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	CDX82392	AT3G16770.1	15159625
AT4G27780.1	CDX92094	AT3G16770.1	15159625
AT4G27780.1	CDX95906	AT3G16770.1	15159625
AT4G27780.1	CDY28337	AT3G16770.1	15159625
AT4G27780.1	CDY34977	AT3G16770.1	15159625
AT4G27780.1	CDY54628	AT3G16770.1	15159625
AT4G27780.1	CDX82214	AT3G21150.1	21798944
AT4G27780.1	CDY19582	AT3G21150.1	21798944
AT4G27780.1	CDY32408	AT3G21150.1	21798944
AT4G27780.1	CDY50075	AT3G21150.1	21798944
AT4G27780.1	CDX72748	AT4G38580.1	18823312
AT4G27780.1	CDX90282	AT4G38580.1	18823312
AT4G27780.1	CDY12089	AT4G38580.1	18823312
AT4G27780.1	CDY65011	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89227	Canola	endoplasmic reticulum	90.56	87.22
AT4G27780.1	Thale cress	endoplasmic reticulum	83.19	79.66
CDY62840	Canola	endoplasmic reticulum	71.68	71.68
CDY49168	Canola	endoplasmic reticulum	70.5	69.88
CDY29860	Canola	endoplasmic reticulum	51.33	69.05
CDX92839	Canola	endoplasmic reticulum	29.79	60.48
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	62.54	60.4
Solyc03g082910.2.1	Tomato	nucleus	60.18	58.96
KRH64393	Soybean	endoplasmic reticulum	60.18	58.96
PGSC0003DMT400047661	Potato	endoplasmic reticulum	60.47	58.91
GSMUA_Achr4P05400_001	Banana	cytosol	47.49	58.33
KRH53542	Soybean	endoplasmic reticulum	60.77	58.19
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	55.16	55.33
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	52.51	55.28
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	52.21	54.97
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	51.33	54.38
Zm00001d001798_P002	Maize	plastid	51.03	52.74
Zm00001d026639_P002	Maize	plasma membrane	51.03	52.74
EES13117	Sorghum	endoplasmic reticulum	51.92	52.69
KXG37573	Sorghum	cytosol	20.06	48.23
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.15	46.19
CDY10995	Canola	endoplasmic reticulum, golgi	18.29	17.13
CDX92624	Canola	endoplasmic reticulum, vacuole	17.7	16.62
CDY03471	Canola	vacuole	16.52	15.09
CDY34268	Canola	endoplasmic reticulum, vacuole	16.22	14.44

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	GO:A0A078G0P3	UniProt:A0A078G0P3	InterPro:Acyl-CoA-binding_protein
InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY19024	ProteinID:CDY19024
ProteinID:CDY19024.1	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00006278001	InterPro:IPR000582	InterPro:IPR002110
InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00887	PFAM:PF13857	PRINTS:PR00689
PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248
SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0004EF1E03	SEG:seg	:

Description

BnaC01g20440DBnaC01g20440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0P3]

Coordinates

chrLK032091:-:431874..434335

Molecular Weight (calculated)

37184.1 Da

IEP (calculated)

4.184

GRAVY (calculated)

-0.466

Length

339 amino acids

Sequence
(BLAST)

001: MGDWAQLAQS VIIGLIFSYL LAKLISIVVT FKEDNLSLTR HHDPEPELKN LKPEADSLVA EQGSSRGDSV AGDTEDEDDD WEGVESTELD EAFSAATLFV
101: TTAASDRLSQ KVPSEVQQQL YGLYKIATEG PCTAPQPSAL KITARAKWQA WQKLGAMPPE EAMEKYIEIV TQLYPTWLDG GVKAGSGSKD DAVSNTGGTM
201: GPVFSSLVYE EESENELKID AIHEFAREGE VENLLKSIDS GIPVNAKDSE GRTPLHWAID RGHFEIAKLL VDKNADVNAK DNEGQTPLHY AVVCDREAIA
301: EFLVKQKANT ASKDDDGNTP LDLCESDWPW LRETAKQTD

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.