Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34977 | Canola | nucleus | 97.12 | 97.93 |
| Bra021200.1-P | Field mustard | nucleus | 97.53 | 97.53 |
| CDX82392 | Canola | nucleus | 81.07 | 80.41 |
| CDX95906 | Canola | nucleus | 79.84 | 79.51 |
| AT3G16770.1 | Thale cress | nucleus | 81.07 | 79.44 |
| CDY54628 | Canola | nucleus | 79.84 | 79.18 |
| CDX92094 | Canola | nucleus | 75.31 | 75.62 |
| KRH12100 | Soybean | nucleus | 44.03 | 47.98 |
| KRH37061 | Soybean | nucleus | 44.44 | 45.57 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.09 | 43.24 |
| Solyc01g065980.2.1 | Tomato | nucleus | 41.98 | 40.16 |
| PGSC0003DMT400043311 | Potato | nucleus | 41.15 | 37.88 |
| CDY27480 | Canola | nucleus | 29.63 | 37.31 |
| CDY51428 | Canola | nucleus | 29.63 | 36.73 |
| CDX72909 | Canola | nucleus | 27.16 | 35.11 |
| CDX68269 | Canola | nucleus | 28.81 | 31.67 |
| CDY37698 | Canola | mitochondrion | 21.4 | 30.77 |
| CDY50643 | Canola | nucleus | 28.4 | 30.4 |
| CDX96402 | Canola | nucleus | 27.98 | 27.2 |
| CDY53788 | Canola | golgi | 21.4 | 26.53 |
| CDX69647 | Canola | nucleus | 22.63 | 25.35 |
| CDY09787 | Canola | nucleus | 22.63 | 24.66 |
| CDY27952 | Canola | nucleus | 21.4 | 24.07 |
| CDY17191 | Canola | nucleus | 21.4 | 24.07 |
| CDX82492 | Canola | nucleus | 32.92 | 22.73 |
| CDX75756 | Canola | nucleus | 32.51 | 22.7 |
| CDY02492 | Canola | nucleus | 28.4 | 22.55 |
| CDY25681 | Canola | nucleus | 28.4 | 22.48 |
| CDX78517 | Canola | nucleus | 23.46 | 22.09 |
| CDX85656 | Canola | nucleus | 22.63 | 22.09 |
| CDY45310 | Canola | nucleus | 23.46 | 21.84 |
| CDX70498 | Canola | nucleus | 23.05 | 21.71 |
| CDY65334 | Canola | nucleus | 34.16 | 21.67 |
| CDX91131 | Canola | nucleus | 22.63 | 21.65 |
| CDX98435 | Canola | nucleus | 33.74 | 21.64 |
| CDY55173 | Canola | nucleus | 22.63 | 21.57 |
| CDY39107 | Canola | nucleus | 34.16 | 21.28 |
| CDX75430 | Canola | nucleus | 22.63 | 20.99 |
| CDX70027 | Canola | nucleus | 21.81 | 20.95 |
| CDX98982 | Canola | nucleus | 21.81 | 20.95 |
| CDX72481 | Canola | nucleus | 22.22 | 20.93 |
| CDX69054 | Canola | nucleus | 22.63 | 20.83 |
| CDY14051 | Canola | nucleus | 21.81 | 20.7 |
| CDX78288 | Canola | nucleus | 21.4 | 20.39 |
| CDX76278 | Canola | nucleus | 22.22 | 20.38 |
| CDY53152 | Canola | nucleus | 18.93 | 20.35 |
| CDY46253 | Canola | nucleus | 21.81 | 20.31 |
| CDX69056 | Canola | nucleus | 16.46 | 19.61 |
| CDX97559 | Canola | nucleus | 34.16 | 19.44 |
| CDY31304 | Canola | nucleus | 25.93 | 16.54 |
| CDY46821 | Canola | nucleus | 25.93 | 16.49 |
| CDY14506 | Canola | nucleus | 25.93 | 16.07 |
| CDY08853 | Canola | nucleus | 25.93 | 15.95 |
| CDX81250 | Canola | nucleus | 24.28 | 14.64 |
| CDY71587 | Canola | cytosol | 0.41 | 1.45 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078GT77 | UniProt:A0A078GT77 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY28337 | ProteinID:CDY28337 | ProteinID:CDY28337.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040116001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EE9711 | SEG:seg | : | : | : |
Description
BnaC01g35070DBnaC01g35070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT77]
Coordinates
chrLK032218:-:7023..8264
Molecular Weight (calculated)
27135.7 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.694
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVISDF APNVTKAKGR KLTAEELWSE LDASAADDFW GFHSTSKTQS TNQQVTLKEE AAEKEKEKEP VTEKMRKRKN VYRGIRKRPW GKWASEIRDP
101: RKGARVWLGT FNTAEEAAMA YDVAAKRIRG DKAKLNFPDL LHHPPRSPAT PLASSPVSEV QPPAKKHCVV SQSELTQPSF PVEYSGVGSG DEFQLDYDLK
201: QQISSLESFL ELDGDSVEQP SQLDESVSEV DMWMIDDVIA SYQ
101: RKGARVWLGT FNTAEEAAMA YDVAAKRIRG DKAKLNFPDL LHHPPRSPAT PLASSPVSEV QPPAKKHCVV SQSELTQPSF PVEYSGVGSG DEFQLDYDLK
201: QQISSLESFL ELDGDSVEQP SQLDESVSEV DMWMIDDVIA SYQ
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.