Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016063.1-P | Field mustard | nucleus | 96.8 | 96.41 |
| CDX72909 | Canola | nucleus | 64.4 | 85.64 |
| CDX68269 | Canola | nucleus | 61.2 | 69.23 |
| CDY50643 | Canola | nucleus | 57.6 | 63.44 |
| AT1G72360.2 | Thale cress | nucleus | 55.2 | 52.67 |
| CDY27480 | Canola | nucleus | 29.6 | 38.34 |
| CDY51428 | Canola | nucleus | 29.2 | 37.24 |
| CDY54628 | Canola | nucleus | 27.6 | 28.16 |
| CDX82392 | Canola | nucleus | 27.6 | 28.16 |
| CDY28337 | Canola | nucleus | 27.2 | 27.98 |
| CDX95906 | Canola | nucleus | 27.2 | 27.87 |
| CDY37698 | Canola | mitochondrion | 18.8 | 27.81 |
| CDY34977 | Canola | nucleus | 26.8 | 27.8 |
| CDX92094 | Canola | nucleus | 26.4 | 27.27 |
| CDY25681 | Canola | nucleus | 30.0 | 24.43 |
| CDY02492 | Canola | nucleus | 29.6 | 24.18 |
| CDX75756 | Canola | nucleus | 33.6 | 24.14 |
| CDY53788 | Canola | golgi | 18.8 | 23.98 |
| CDX82492 | Canola | nucleus | 32.8 | 23.3 |
| CDY27952 | Canola | nucleus | 20.0 | 23.15 |
| CDY17191 | Canola | nucleus | 20.0 | 23.15 |
| CDY65334 | Canola | nucleus | 35.2 | 22.98 |
| CDX69647 | Canola | nucleus | 19.6 | 22.58 |
| CDY39107 | Canola | nucleus | 35.2 | 22.56 |
| CDY09787 | Canola | nucleus | 19.6 | 21.97 |
| CDX98435 | Canola | nucleus | 32.8 | 21.64 |
| CDY53152 | Canola | nucleus | 18.4 | 20.35 |
| CDX78517 | Canola | nucleus | 20.8 | 20.16 |
| CDX70498 | Canola | nucleus | 20.8 | 20.16 |
| CDY55173 | Canola | nucleus | 20.4 | 20.0 |
| CDX85656 | Canola | nucleus | 19.6 | 19.68 |
| CDX97559 | Canola | nucleus | 33.6 | 19.67 |
| CDY14051 | Canola | nucleus | 20.0 | 19.53 |
| CDX91131 | Canola | nucleus | 19.6 | 19.29 |
| CDX70027 | Canola | nucleus | 19.2 | 18.97 |
| CDX98982 | Canola | nucleus | 19.2 | 18.97 |
| CDX78288 | Canola | nucleus | 18.8 | 18.43 |
| CDX72481 | Canola | nucleus | 17.6 | 17.05 |
| CDY45310 | Canola | nucleus | 17.6 | 16.86 |
| CDX69054 | Canola | nucleus | 17.6 | 16.67 |
| CDX76278 | Canola | nucleus | 17.6 | 16.6 |
| CDY46253 | Canola | nucleus | 17.2 | 16.48 |
| CDX75430 | Canola | nucleus | 17.2 | 16.41 |
| CDX69056 | Canola | nucleus | 13.2 | 16.18 |
| CDY31304 | Canola | nucleus | 22.0 | 14.44 |
| CDY08853 | Canola | nucleus | 22.8 | 14.43 |
| CDY46821 | Canola | nucleus | 22.0 | 14.4 |
| CDY14506 | Canola | nucleus | 22.4 | 14.29 |
| CDX81250 | Canola | nucleus | 21.2 | 13.15 |
| CDY71587 | Canola | cytosol | 0.8 | 2.9 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078E5P0 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX96402 |
| ProteinID:CDX96402 | ProteinID:CDX96402.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00102559001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000189D14B | SEG:seg | : | : | : | : |
Description
BnaA07g30130D
Coordinates
chrLK031894:+:660198..660950
Molecular Weight (calculated)
28312.0 Da
IEP (calculated)
4.717
GRAVY (calculated)
-0.742
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVISDY IAPGAGKPSW IRDDVVDLTL DDLEGDSQCY PWLGMKREDG RRKKKTNKSS SSEYRGIRRR PWGRWAAEIR DPIKGVRVWL GTFNTAQDAA
101: RAYDFEAKRL RGVKAKLNFP NESPASSSRK RKASSPPPTQ RPQVRKIEEK REDVDVLGGG CFDFLWEENN NADASQVDTQ WLEDVIIMGD DAEKRQKGYY
201: DCEGNVDELL AFENETECFL QTPFMEGGNC GFSTSLTSLL DEVNVMDLWF
101: RAYDFEAKRL RGVKAKLNFP NESPASSSRK RKASSPPPTQ RPQVRKIEEK REDVDVLGGG CFDFLWEENN NADASQVDTQ WLEDVIIMGD DAEKRQKGYY
201: DCEGNVDELL AFENETECFL QTPFMEGGNC GFSTSLTSLL DEVNVMDLWF
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.