Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001541.1-P | Field mustard | nucleus | 91.38 | 90.34 |
| CDX82492 | Canola | nucleus | 91.09 | 90.06 |
| CDX98435 | Canola | nucleus | 78.74 | 72.3 |
| AT3G14230.1 | Thale cress | nucleus | 75.86 | 69.66 |
| CDY39107 | Canola | nucleus | 77.01 | 68.72 |
| CDY65334 | Canola | nucleus | 75.29 | 68.41 |
| CDX97559 | Canola | nucleus | 79.02 | 64.4 |
| CDY25681 | Canola | nucleus | 56.32 | 63.84 |
| CDY02492 | Canola | nucleus | 56.03 | 63.73 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 24.14 | 42.42 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 24.71 | 42.16 |
| CDY27480 | Canola | nucleus | 23.28 | 41.97 |
| CDY51428 | Canola | nucleus | 23.56 | 41.84 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 24.71 | 40.95 |
| Os01t0313300-01 | Rice | nucleus | 23.56 | 39.61 |
| CDX68269 | Canola | nucleus | 24.14 | 38.01 |
| CDX72909 | Canola | nucleus | 20.4 | 37.77 |
| EES00666 | Sorghum | nucleus | 23.85 | 36.56 |
| Zm00001d009103_P001 | Maize | nucleus | 23.56 | 35.65 |
| CDY50643 | Canola | nucleus | 22.99 | 35.24 |
| Zm00001d040651_P001 | Maize | nucleus | 23.56 | 34.6 |
| CDX96402 | Canola | nucleus | 24.14 | 33.6 |
| CDY34977 | Canola | nucleus | 22.99 | 33.2 |
| CDY37698 | Canola | mitochondrion | 15.8 | 32.54 |
| CDY28337 | Canola | nucleus | 22.7 | 32.51 |
| CDY54628 | Canola | nucleus | 22.7 | 32.24 |
| CDX95906 | Canola | nucleus | 22.41 | 31.97 |
| CDX82392 | Canola | nucleus | 22.41 | 31.84 |
| CDX92094 | Canola | nucleus | 22.13 | 31.82 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 24.14 | 28.09 |
| CDY53788 | Canola | golgi | 15.8 | 28.06 |
| CDY17191 | Canola | nucleus | 16.38 | 26.39 |
| CDY27952 | Canola | nucleus | 16.38 | 26.39 |
| CDX69647 | Canola | nucleus | 15.23 | 24.42 |
| CDY09787 | Canola | nucleus | 15.23 | 23.77 |
| CDY14051 | Canola | nucleus | 17.24 | 23.44 |
| CDX98982 | Canola | nucleus | 16.95 | 23.32 |
| CDX70027 | Canola | nucleus | 16.95 | 23.32 |
| CDY55173 | Canola | nucleus | 16.95 | 23.14 |
| CDX78288 | Canola | nucleus | 16.67 | 22.75 |
| CDY53152 | Canola | nucleus | 14.66 | 22.57 |
| Zm00001d007033_P001 | Maize | plastid | 18.39 | 22.54 |
| CDX70498 | Canola | nucleus | 16.67 | 22.48 |
| CDX78517 | Canola | nucleus | 16.67 | 22.48 |
| CDX85656 | Canola | nucleus | 15.8 | 22.09 |
| CDX91131 | Canola | nucleus | 15.8 | 21.65 |
| CDX75430 | Canola | nucleus | 15.52 | 20.61 |
| CDX76278 | Canola | nucleus | 15.52 | 20.38 |
| CDY45310 | Canola | nucleus | 15.23 | 20.31 |
| CDY31304 | Canola | nucleus | 22.13 | 20.21 |
| CDX69054 | Canola | nucleus | 15.23 | 20.08 |
| CDY46253 | Canola | nucleus | 14.94 | 19.92 |
| CDY46821 | Canola | nucleus | 21.84 | 19.9 |
| CDX72481 | Canola | nucleus | 14.66 | 19.77 |
| CDY14506 | Canola | nucleus | 21.84 | 19.39 |
| CDY08853 | Canola | nucleus | 21.26 | 18.73 |
| CDX81250 | Canola | nucleus | 20.4 | 17.62 |
| CDX69056 | Canola | nucleus | 10.06 | 17.16 |
| CDY71587 | Canola | cytosol | 0.57 | 2.9 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078CF06 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX75756 |
| ProteinID:CDX75756 | ProteinID:CDX75756.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123687001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000067A4E8 | SEG:seg | : | : | : | : |
Description
BnaC03g38390D
Coordinates
chrLK031805:-:367139..369210
Molecular Weight (calculated)
39068.2 Da
IEP (calculated)
4.647
GRAVY (calculated)
-0.776
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISEF IPPPNSRRVT SEFIWPDLKN LKKKKSRKRS DFLDLDDEFE ADFKGFKDDD SSFDCEDGFD VKPFAFTAAS LPTNVASTGS VSGKKTIESD
101: EKSGKRKRKN QYRGIRLRPW GKWAAEIRDP KKGSREWLGT FETAEEAARA YDAAARRIRG GKAKVNFPEE VISNLKKPVA KPNHTPALVQ PPTHVGQYCN
201: NNSFDNMGHD SLSFIEEKPQ MYNNQFFDVG QYFSSDQGSN SFDCSEFGWS DHAPKTPPEI SSMLVNNNRA TFDEETNAAK KVKLNSEDET SDNDDLMAYL
301: DNALWESPLE MEAMLGVDVA ADGVAQKEAN PMELWSLDDI NFMLDGDF
101: EKSGKRKRKN QYRGIRLRPW GKWAAEIRDP KKGSREWLGT FETAEEAARA YDAAARRIRG GKAKVNFPEE VISNLKKPVA KPNHTPALVQ PPTHVGQYCN
201: NNSFDNMGHD SLSFIEEKPQ MYNNQFFDVG QYFSSDQGSN SFDCSEFGWS DHAPKTPPEI SSMLVNNNRA TFDEETNAAK KVKLNSEDET SDNDDLMAYL
301: DNALWESPLE MEAMLGVDVA ADGVAQKEAN PMELWSLDDI NFMLDGDF
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.