Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008835.1-P | Field mustard | nucleus | 95.07 | 97.7 |
| CDX69647 | Canola | nucleus | 95.07 | 97.7 |
| AT5G13330.1 | Thale cress | nucleus | 74.44 | 78.3 |
| CDX85656 | Canola | nucleus | 81.61 | 73.09 |
| CDX70498 | Canola | nucleus | 83.41 | 72.09 |
| CDX91131 | Canola | nucleus | 82.06 | 72.05 |
| CDX78517 | Canola | nucleus | 82.06 | 70.93 |
| CDY37698 | Canola | mitochondrion | 30.04 | 39.65 |
| KRH01504 | Soybean | nucleus | 41.26 | 38.02 |
| VIT_01s0150g00120.t01 | Wine grape | nucleus, plastid | 39.91 | 37.55 |
| HORVU2Hr1G071270.4 | Barley | nucleus | 27.8 | 35.03 |
| CDY53788 | Canola | golgi | 30.49 | 34.69 |
| KRH45195 | Soybean | nucleus | 43.05 | 34.66 |
| CDY17191 | Canola | nucleus | 32.74 | 33.8 |
| CDY27952 | Canola | nucleus | 32.29 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 33.18 | 32.6 |
| CDY53152 | Canola | nucleus | 32.74 | 32.3 |
| TraesCS2A01G288000.1 | Wheat | nucleus | 36.32 | 32.27 |
| CDX70027 | Canola | nucleus | 36.32 | 32.02 |
| CDX98982 | Canola | nucleus | 36.32 | 32.02 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 36.32 | 32.02 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 35.43 | 31.23 |
| CDY14051 | Canola | nucleus | 35.43 | 30.86 |
| Os04t0398000-02 | Rice | nucleus | 36.32 | 30.22 |
| CDX78288 | Canola | nucleus | 34.53 | 30.2 |
| CDY55173 | Canola | nucleus | 34.53 | 30.2 |
| GSMUA_Achr6P08140_001 | Banana | nucleus | 34.98 | 28.06 |
| CDY27480 | Canola | nucleus | 23.77 | 27.46 |
| CDY51428 | Canola | nucleus | 23.77 | 27.04 |
| GSMUA_Achr2P21430_001 | Banana | nucleus, plastid | 34.08 | 26.12 |
| CDX72909 | Canola | nucleus | 21.52 | 25.53 |
| CDX72481 | Canola | nucleus | 26.46 | 22.87 |
| CDY28337 | Canola | nucleus | 24.66 | 22.63 |
| CDY34977 | Canola | nucleus | 24.22 | 22.41 |
| CDY46253 | Canola | nucleus | 26.01 | 22.22 |
| CDY45310 | Canola | nucleus | 26.01 | 22.22 |
| CDX92094 | Canola | nucleus | 23.77 | 21.9 |
| CDX76278 | Canola | nucleus | 26.01 | 21.89 |
| CDX68269 | Canola | nucleus | 21.52 | 21.72 |
| CDX82392 | Canola | nucleus | 23.77 | 21.63 |
| CDY54628 | Canola | nucleus | 23.77 | 21.63 |
| CDX75430 | Canola | nucleus | 25.11 | 21.37 |
| CDX95906 | Canola | nucleus | 23.32 | 21.31 |
| CDX69054 | Canola | nucleus | 25.11 | 21.21 |
| CDY50643 | Canola | nucleus | 21.52 | 21.15 |
| CDX69056 | Canola | nucleus | 18.39 | 20.1 |
| CDX96402 | Canola | nucleus | 21.97 | 19.6 |
| CDY31304 | Canola | nucleus | 29.6 | 17.32 |
| CDY14506 | Canola | nucleus | 30.04 | 17.09 |
| CDY46821 | Canola | nucleus | 29.15 | 17.02 |
| CDY08853 | Canola | nucleus | 30.04 | 16.96 |
| OQU81440 | Sorghum | nucleus | 37.22 | 16.73 |
| CDX81250 | Canola | nucleus | 28.7 | 15.88 |
| CDX75756 | Canola | nucleus | 23.77 | 15.23 |
| CDX82492 | Canola | nucleus | 23.32 | 14.77 |
| CDY02492 | Canola | nucleus | 19.28 | 14.05 |
| CDY25681 | Canola | nucleus | 18.83 | 13.68 |
| CDY65334 | Canola | nucleus | 22.87 | 13.32 |
| CDX98435 | Canola | nucleus | 22.42 | 13.19 |
| CDY39107 | Canola | nucleus | 22.87 | 13.08 |
| CDX97559 | Canola | nucleus | 22.87 | 11.94 |
| CDY71587 | Canola | cytosol | 1.79 | 5.8 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078F9M2 | UniProt:A0A078F9M2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY09787 | ProteinID:CDY09787 | ProteinID:CDY09787.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031494001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF58 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDEE50 | SEG:seg | : | : | : | : |
Description
BnaC09g43740DBnaC09g43740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9M2]
Coordinates
chrLK031999:+:101895..105492
Molecular Weight (calculated)
25348.0 Da
IEP (calculated)
7.779
GRAVY (calculated)
-1.116
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MISSLNRAIE YPAADGQERS DSPIKQELSK SDQLQQDQDQ PRRKNYRGVR QRPWGKWAAE IRDPKKAARV WLGTFETAEE AAFAYDRAAL KFKGTKAKLN
101: FPEHLQGPST TTYVASQSGI DHVPRGGSEL MNSPPPPPPP PPTTTTWPTN YNQDILQYAQ LLTSNNDVDL SYYTSSLLSQ QQQPFSTSSS SSSSLSSQQQ
201: QQLHQQREEE KNYGYHYYNY PRE
101: FPEHLQGPST TTYVASQSGI DHVPRGGSEL MNSPPPPPPP PPTTTTWPTN YNQDILQYAQ LLTSNNDVDL SYYTSSLLSQ QQQPFSTSSS SSSSLSSQQQ
201: QQLHQQREEE KNYGYHYYNY PRE
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.