Factsheet for GSMUA_Achr10P12150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08140_001	Banana	nucleus	72.69	59.35
TraesCS2A01G288000.1	Wheat	nucleus	51.98	47.01
HORVU2Hr1G071270.4	Barley	nucleus	36.56	46.89
TraesCS2D01G286300.1	Wheat	nucleus	51.98	46.64
TraesCS2B01G304800.1	Wheat	nucleus	51.54	46.25
Os04t0398000-02	Rice	nucleus	49.78	42.16
AT5G13330.1	Thale cress	nucleus	34.8	37.26
GSMUA_Achr11P...	Banana	nucleus	40.97	36.33
GSMUA_Achr7P18930_001	Banana	nucleus	22.03	35.97
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	36.56	35.02
Bra008835.1-P	Field mustard	nucleus	33.04	34.56
CDX69647	Canola	nucleus	33.04	34.56
CDY09787	Canola	nucleus	32.6	33.18
KRH01504	Soybean	nucleus	34.36	32.23
Bra006195.1-P	Field mustard	nucleus	36.12	31.78
CDX70498	Canola	nucleus	36.12	31.78
CDX78517	Canola	nucleus	36.12	31.78
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	40.53	31.62
Bra023404.1-P	Field mustard	nucleus	34.36	31.33
CDX85656	Canola	nucleus	34.36	31.33
CDX91131	Canola	nucleus	33.92	30.32
GSMUA_Achr6P25680_001	Banana	nucleus	30.84	30.3
KRH45195	Soybean	nucleus	35.68	29.24
GSMUA_Achr6P18020_001	Banana	nucleus	32.6	27.92
GSMUA_Achr3P08170_001	Banana	nucleus	22.03	27.17
GSMUA_Achr6P02310_001	Banana	nucleus	23.35	26.77
GSMUA_Achr3P08180_001	Banana	nucleus	22.91	26.4
GSMUA_Achr11P...	Banana	nucleus	22.91	26.13
GSMUA_Achr3P06960_001	Banana	nucleus	25.99	25.11
GSMUA_AchrUn_...	Banana	nucleus	22.91	24.07
GSMUA_AchrUn_...	Banana	nucleus	24.23	23.5
GSMUA_Achr2P21900_001	Banana	nucleus	15.86	23.38
OQU81440	Sorghum	nucleus	50.66	23.19
GSMUA_Achr8P22500_001	Banana	nucleus	24.23	22.36
GSMUA_Achr10P...	Banana	nucleus	28.63	22.11
GSMUA_Achr6P10870_001	Banana	nucleus	22.47	21.52
GSMUA_Achr3P10140_001	Banana	nucleus	21.59	21.3
GSMUA_Achr9P18090_001	Banana	nucleus	22.91	20.97
GSMUA_Achr3P05800_001	Banana	nucleus	22.03	18.25
GSMUA_Achr10P...	Banana	nucleus	21.59	18.22
GSMUA_Achr8P23730_001	Banana	nucleus	24.67	17.18
GSMUA_Achr10P...	Banana	nucleus	21.59	17.07
GSMUA_Achr2P07300_001	Banana	nucleus	23.35	16.06
GSMUA_Achr7P19800_001	Banana	nucleus	23.79	14.88
GSMUA_AchrUn_...	Banana	nucleus	24.23	14.71
GSMUA_Achr5P24060_001	Banana	nucleus	23.79	14.06

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987
GO:GO:0019748	GO:GO:0019760	GO:GO:0043565	GO:GO:0045893	GO:GO:0071497	EnsemblPlantsGene:GSMUA_Achr10G12150_001
EnsemblPlants:GSMUA_Achr10P12150_001	EnsemblPlants:GSMUA_Achr10T12150_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RHJ1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF73	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002954148	SEG:seg	:	:	:	:

Description

AP2 domain transcription factor RAP2.3, putative [Source:GMGC_GENE;Acc:GSMUA_Achr10G12150_001]

Coordinates

chr10:+:21284401..21285949

Molecular Weight (calculated)

24385.2 Da

IEP (calculated)

9.929

GRAVY (calculated)

-0.621

Length

227 amino acids

Sequence
(BLAST)

001: MVSALSRVIS SSSSVIDASA GEPTVNQQGI KLEGADPGEK QAIQISEEQG TVRRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAED AAVAYDEAAL
101: RFKGSKAKLN FPQRVQGRAE LSFLASPGIP RRQPQPPTRP PASSYPDLFR YAQLLQSGDD NLQSVASGLY VGSAFTSAPS QAPPSSTSGS LPQFLGFSSH
201: SPYSSSSSSS GSWVYGDHKD KDSSRPP

Best Arabidopsis Sequence Match ( AT5G61890.1 )
(BLAST)

001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY

Arabidopsis Description

ERF114Ethylene-responsive transcription factor ERF114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.