Factsheet for GSMUA_Achr2P21900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08170_001	Banana	nucleus	38.96	32.61
GSMUA_Achr3P10140_001	Banana	nucleus	48.05	32.17
GSMUA_Achr6P10870_001	Banana	nucleus	48.05	31.22
GSMUA_Achr11P...	Banana	nucleus	38.96	30.15
GSMUA_Achr9P18090_001	Banana	nucleus	48.05	29.84
GSMUA_AchrUn_...	Banana	nucleus	41.56	29.63
GSMUA_Achr7P18930_001	Banana	nucleus	25.32	28.06
GSMUA_Achr3P05800_001	Banana	nucleus	49.35	27.74
GSMUA_Achr10P...	Banana	nucleus	49.35	26.48
GSMUA_Achr2P07300_001	Banana	nucleus	56.49	26.36
GSMUA_AchrUn_...	Banana	nucleus	37.01	24.36
GSMUA_Achr10P...	Banana	nucleus	40.26	23.05
GSMUA_Achr8P23730_001	Banana	nucleus	46.75	22.09
GSMUA_Achr7P19800_001	Banana	nucleus	51.95	22.04
GSMUA_Achr3P08180_001	Banana	nucleus	27.92	21.83
GSMUA_Achr5P24060_001	Banana	nucleus	53.25	21.35
GSMUA_AchrUn_...	Banana	nucleus	50.65	20.86
GSMUA_Achr6P02310_001	Banana	nucleus	24.68	19.19
GSMUA_Achr8P22500_001	Banana	nucleus	29.87	18.7
GSMUA_Achr3P06960_001	Banana	nucleus	27.92	18.3
GSMUA_Achr6P18020_001	Banana	nucleus	29.87	17.36
GSMUA_Achr6P25680_001	Banana	nucleus	25.97	17.32
GSMUA_Achr10P...	Banana	nucleus	23.38	15.86
GSMUA_Achr11P...	Banana	nucleus	24.68	14.84
GSMUA_Achr6P08140_001	Banana	nucleus	24.03	13.31
GSMUA_Achr10P...	Banana	nucleus	25.32	13.27
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	24.68	13.06

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G21900_001	EnsemblPlants:GSMUA_Achr2P21900_001
EnsemblPlants:GSMUA_Achr2T21900_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SA31	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295069D
SEG:seg	:	:	:	:	:

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G21900_001]

Coordinates

chr2:-:21196624..21198407

Molecular Weight (calculated)

17560.7 Da

IEP (calculated)

5.094

GRAVY (calculated)

-0.587

Length

154 amino acids

Sequence
(BLAST)

001: MYGNAIISDF IPTPALWPGK PKRGKRLMVE DQKEGKADFQ EFNDESEEDE FDAMRFSFGS KSIISRAFTI ALQIFLKKKK NQYRGIRQCP WGKWAAEIRD
101: PHKGVHVWLG TFNTAEEAAR AYDVEALPAE ENAAAKLSEE LSAYEIQTIY EVPP

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.