Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P21900_001 | Banana | nucleus | 31.22 | 48.05 |
| GSMUA_Achr3P05800_001 | Banana | nucleus | 52.74 | 45.62 |
| GSMUA_Achr11P... | Banana | nucleus | 37.55 | 44.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.08 | 43.98 |
| GSMUA_Achr3P10140_001 | Banana | nucleus | 42.19 | 43.48 |
| GSMUA_Achr3P08170_001 | Banana | nucleus | 33.76 | 43.48 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 60.34 | 43.33 |
| GSMUA_Achr9P18090_001 | Banana | nucleus | 45.15 | 43.15 |
| GSMUA_Achr10P... | Banana | nucleus | 51.05 | 42.16 |
| GSMUA_Achr7P18930_001 | Banana | nucleus | 22.36 | 38.13 |
| GSMUA_Achr10P... | Banana | nucleus | 43.04 | 37.92 |
| GSMUA_Achr8P23730_001 | Banana | nucleus | 49.79 | 36.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.44 | 35.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.7 | 35.29 |
| GSMUA_Achr7P19800_001 | Banana | nucleus | 49.37 | 32.23 |
| GSMUA_Achr5P24060_001 | Banana | nucleus | 51.48 | 31.77 |
| PGSC0003DMT400074248 | Potato | nucleus | 48.52 | 29.64 |
| Solyc12g049560.1.1 | Tomato | nucleus | 47.68 | 29.27 |
| GSMUA_Achr3P08180_001 | Banana | nucleus | 23.63 | 28.43 |
| GSMUA_Achr8P22500_001 | Banana | nucleus | 25.74 | 24.8 |
| GSMUA_Achr6P02310_001 | Banana | nucleus | 20.25 | 24.24 |
| GSMUA_Achr6P25680_001 | Banana | nucleus | 23.21 | 23.81 |
| GSMUA_Achr3P06960_001 | Banana | nucleus | 22.78 | 22.98 |
| GSMUA_Achr10P... | Banana | nucleus | 21.52 | 22.47 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 23.63 | 21.13 |
| GSMUA_Achr11P... | Banana | nucleus | 22.36 | 20.7 |
| GSMUA_Achr6P08140_001 | Banana | nucleus | 23.63 | 20.14 |
| GSMUA_Achr10P... | Banana | nucleus | 21.52 | 17.35 |
| GSMUA_Achr2P21430_001 | Banana | nucleus, plastid | 21.1 | 17.18 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr6G10870_001 |
| EnsemblPlants:GSMUA_Achr6P10870_001 | EnsemblPlants:GSMUA_Achr6T10870_001 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0T5Y6 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF8 | SMART:SM00380 | SUPFAM:SSF54171 |
| TMHMM:TMhelix | UniParc:UPI00029651CD | SEG:seg | : | : | : |
Description
Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G10870_001]
Coordinates
chr6:+:7250668..7252095
Molecular Weight (calculated)
26314.0 Da
IEP (calculated)
5.204
GRAVY (calculated)
-0.278
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF IPASRRVTAE QLWFDGGETE AGEFDAKRVF LDLTLVSLMF LIIAFQSFAW FAEGSAKSVR FDGSAAKSAK RKRKNQYRGI RQRPWGKWAA
101: EIRDPRKGIR VWLGTFNTAE EAARAYDAEA RRIRGRKAKV NFPTAATASS SAPPEGASLN FYSDEGSNSF AEKNSAIELS EELYPYEPCM KFLPAPYFGR
201: SSDALIDILF GGELVQGGVD VLDLWNFDDL PMEASVY
101: EIRDPRKGIR VWLGTFNTAE EAARAYDAEA RRIRGRKAKV NFPTAATASS SAPPEGASLN FYSDEGSNSF AEKNSAIELS EELYPYEPCM KFLPAPYFGR
201: SSDALIDILF GGELVQGGVD VLDLWNFDDL PMEASVY
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.