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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
  • plastid 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074248 Potato nucleus 90.93 90.46
Solyc03g123500.2.1 Tomato nucleus 55.7 55.7
Solyc06g063070.2.1 Tomato nucleus 49.22 51.08
GSMUA_Achr6P10870_001 Banana nucleus 29.27 47.68
Os02t0782700-01 Rice nucleus 34.97 36.99
EES07642 Sorghum nucleus 35.23 36.96
Os06t0194000-02 Rice nucleus 34.46 36.74
Zm00001d052087_P001 Maize nucleus 34.2 36.57
Zm00001d045044_P001 Maize nucleus, plastid 34.2 36.36
TraesCSU01G183700.1 Wheat nucleus 26.68 36.27
Solyc09g075420.2.1 Tomato nucleus 24.09 35.77
EER87998 Sorghum nucleus 33.16 35.75
TraesCS7A01G158000.1 Wheat nucleus 32.64 35.69
Os09t0434500-01 Rice vacuole 36.53 35.61
TraesCS7D01G158500.1 Wheat nucleus 32.64 35.49
TraesCS5B01G214400.1 Wheat nucleus 35.23 35.23
TraesCS7B01G062200.1 Wheat nucleus 32.38 35.21
TraesCS5D01G223700.1 Wheat nucleus 34.72 35.17
TraesCS5A01G215900.1 Wheat nucleus 34.2 35.01
HORVU6Hr1G082880.1 Barley nucleus 33.16 34.69
KXG35689 Sorghum nucleus, plastid 34.97 34.62
HORVU0Hr1G021820.1 Barley nucleus 25.65 34.62
TraesCS6D01G324200.1 Wheat nucleus 35.23 34.17
TraesCS6A01G343300.1 Wheat nucleus 35.23 34.17
TraesCS6D01G085000.1 Wheat nucleus 28.5 33.95
TraesCS6B01G375400.1 Wheat nucleus 34.72 33.67
HORVU7Hr1G032750.1 Barley nucleus, plastid 33.94 33.59
TraesCS7D01G416300.1 Wheat nucleus 28.76 33.53
TraesCS6B01G126700.1 Wheat nucleus, plastid 20.47 33.47
TraesCS7D01G378200.1 Wheat nucleus 23.83 32.97
TraesCS7B01G283900.1 Wheat nucleus 23.83 32.97
TraesCS6D01G084200.1 Wheat nucleus 32.12 32.72
Solyc01g065980.2.1 Tomato nucleus 21.5 32.68
TraesCS6B01G126600.1 Wheat nucleus 30.83 32.51
HORVU6Hr1G017530.1 Barley nucleus 32.9 32.48
Zm00001d020595_P001 Maize nucleus 34.72 32.06
KXG36690 Sorghum nucleus 26.42 31.88
HORVU7Hr1G090440.1 Barley nucleus 30.83 31.82
TraesCS7B01G324400.1 Wheat nucleus 25.65 31.73
TraesCS6A01G097500.1 Wheat nucleus 29.79 31.59
TraesCS7A01G377400.1 Wheat nucleus 27.72 31.47
HORVU5Hr1G062940.1 Barley nucleus, plastid 33.16 31.45
TraesCS6A01G097700.1 Wheat nucleus 29.27 31.22
Os07t0617000-02 Rice nucleus 27.46 30.99
HORVU6Hr1G082840.1 Barley nucleus 24.87 30.77
TraesCS7D01G373700.1 Wheat nucleus 28.5 30.64
HORVU6Hr1G076090.2 Barley nucleus 25.39 30.62
Zm00001d005798_P001 Maize nucleus 33.16 30.26
TraesCS6D01G084900.1 Wheat nucleus 30.05 29.82
HORVU6Hr1G083520.2 Barley nucleus, plastid 24.87 29.72
HORVU6Hr1G064370.1 Barley nucleus 22.28 29.66
TraesCS6B01G125900.1 Wheat nucleus 29.53 29.61
TraesCS7B01G278700.1 Wheat nucleus 27.98 28.2
Solyc02g090800.1.1 Tomato nucleus 9.33 27.48
Solyc02g090770.1.1 Tomato nucleus 13.73 26.11
TraesCS6B01G427100.1 Wheat nucleus 21.76 25.38
Zm00001d018305_P001 Maize nucleus 18.39 25.18
EES13952 Sorghum nucleus 22.8 23.72
Zm00001d032095_P001 Maize nucleus 23.06 23.42
Solyc02g090790.1.1 Tomato nucleus 13.21 22.47
Solyc10g050970.1.1 Tomato nucleus 12.18 21.08
Solyc03g118190.2.1 Tomato nucleus 13.21 20.9
Zm00001d047339_P001 Maize plastid 24.35 20.84
Solyc04g051360.2.1 Tomato nucleus 14.77 18.81
Solyc12g042210.1.1 Tomato nucleus 13.73 18.47
Solyc12g056590.1.1 Tomato nucleus 14.51 18.06
Solyc06g068830.1.1 Tomato nucleus 12.95 17.3
Solyc01g108240.2.1 Tomato nucleus 12.95 16.95
Solyc04g012050.2.1 Tomato nucleus 15.29 14.82
Zm00001d045386_P002 Maize plastid 15.03 14.22
Solyc04g071770.2.1 Tomato nucleus 15.8 13.5
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfInterPro:DNA-bd_dom_sfGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955UniProt:K4DFN6
PFAM:PF00847PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31190PANTHER:PTHR31190:SF66SMART:SM00380
SUPFAM:SSF54171EnsemblPlantsGene:Solyc12g049560.1EnsemblPlants:Solyc12g049560.1.1UniParc:UPI0002769B7DSEG:seg:
Description
No Description!
Coordinates
chr12:+:36676726..36678944
Molecular Weight (calculated)
42703.3 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.719
Length
386 amino acids
Sequence
(BLAST)
001: MCGGAIISDW IPPSRSSSRL TADQLWGCAD LQNKKRNKKK RNPSNYHSKR LRSENVDFEA DFQDFKDFSD DEEAYSLDIK PFAFSASELS GTSAGSESLI
101: SVDANKEVEK SAKRQRKNQY RGIRKRPWGK WAAEIRDPQK GVRVWIGTFN TAEEAARAYD AEARRIRGNK AKVNFPDEAS VPASRQAGKV NPRKVLSDES
201: SNPVPPNTML MNNLNSGYCD NVGLLEEKTK TLNGYEALCV TPVDTGPNPY PHPAAAGVYF NSDQGSNSFG PSDFWGETCS RTPDISSVLS AAIECDEAQF
301: IEGVDLEEKP KSCTNNLVPN NVNTEHKPPE VFSTFESQLK FYQTPYSEGN MDVPVDAFLD ADATQGVENA MDLWSFDELS SLMGGI
Best Arabidopsis Sequence Match ( AT1G53910.1 )
(BLAST)
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.