CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052087_P001	Maize	nucleus	86.68	88.37
Zm00001d018305_P001	Maize	nucleus	64.95	84.75
HORVU6Hr1G082880.1	Barley	nucleus	62.77	62.6
TraesCS6A01G343300.1	Wheat	nucleus	66.58	61.56
TraesCS6B01G375400.1	Wheat	nucleus	64.4	59.55
TraesCS6D01G324200.1	Wheat	nucleus	63.59	58.79
HORVU6Hr1G017530.1	Barley	nucleus	61.41	57.8
TraesCS7D01G416300.1	Wheat	nucleus	51.63	57.4
HORVU0Hr1G021820.1	Barley	nucleus	44.57	57.34
TraesCS7A01G377400.1	Wheat	nucleus	52.72	57.06
EER87998	Sorghum	nucleus	55.16	56.7
TraesCS7B01G283900.1	Wheat	nucleus	42.66	56.27
TraesCS6D01G084200.1	Wheat	nucleus	57.61	55.94
TraesCS7D01G378200.1	Wheat	nucleus	42.12	55.56
HORVU6Hr1G076090.2	Barley	nucleus	47.83	55.0
TraesCS6B01G126600.1	Wheat	nucleus	54.62	54.92
TraesCS6D01G085000.1	Wheat	nucleus	48.1	54.63
TraesCSU01G183700.1	Wheat	nucleus	41.85	54.23
TraesCS7B01G324400.1	Wheat	nucleus	45.92	54.17
TraesCS7D01G373700.1	Wheat	nucleus	52.17	53.48
HORVU7Hr1G090440.1	Barley	nucleus	54.35	53.48
HORVU6Hr1G083520.2	Barley	nucleus, plastid	46.47	52.94
HORVU6Hr1G082840.1	Barley	nucleus	44.84	52.88
TraesCS6A01G097700.1	Wheat	nucleus	51.9	52.76
TraesCS6B01G126700.1	Wheat	nucleus, plastid	32.88	51.27
HORVU6Hr1G064370.1	Barley	nucleus	40.22	51.03
TraesCS6D01G084900.1	Wheat	nucleus	53.26	50.39
TraesCS6A01G097500.1	Wheat	nucleus	49.46	50.0
TraesCS6B01G125900.1	Wheat	nucleus	51.9	49.61
TraesCS7B01G278700.1	Wheat	nucleus	49.73	47.78
TraesCS6B01G427100.1	Wheat	nucleus	41.85	46.53
VIT_09s0002g00470.t01	Wine grape	nucleus	42.66	41.42
KRG97290	Soybean	nucleus	32.61	40.13
KRH69017	Soybean	nucleus	36.96	39.42
EES00666	Sorghum	nucleus	23.37	37.89
Solyc06g063070.2.1	Tomato	nucleus	38.04	37.63
GSMUA_Achr2P07300_001	Banana	nucleus	33.42	37.27
PGSC0003DMT400012547	Potato	nucleus	37.5	37.1
Solyc03g123500.2.1	Tomato	nucleus	37.5	35.75
KRH06265	Soybean	nucleus	36.68	35.34
Solyc12g049560.1.1	Tomato	nucleus	36.96	35.23
PGSC0003DMT400074248	Potato	nucleus	36.68	34.79
KRH47694	Soybean	nucleus	36.96	34.69
PGSC0003DMT400023609	Potato	nucleus	36.68	34.62
KXG35689	Sorghum	nucleus, plastid	35.05	33.08
GSMUA_AchrUn_...	Banana	nucleus	33.42	32.89
KXG36690	Sorghum	nucleus	28.26	32.5
KXG40036	Sorghum	nucleus	29.35	32.24
EES13952	Sorghum	nucleus	27.99	27.76
EES18078	Sorghum	nucleus	14.67	27.14
EER97023	Sorghum	nucleus	15.22	24.67
KXG31168	Sorghum	nucleus	15.22	22.49
EER96855	Sorghum	mitochondrion, nucleus	16.03	20.07
OQU80635	Sorghum	nucleus	15.49	19.52
OQU82952	Sorghum	mitochondrion	15.76	17.63
OQU80805	Sorghum	nucleus	14.4	17.61
OQU85019	Sorghum	nucleus	12.5	15.75
OQU78803	Sorghum	nucleus	14.4	15.54
OQU81440	Sorghum	nucleus	15.49	11.49

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8082696	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XTP7
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES07642	ProteinID:EES07642	ProteinID:EES07642.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF44	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G321300	SUPFAM:SSF54171
unigene:Sbi.1085	UniParc:UPI0001A86235	RefSeq:XP_002454666.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:65622153..65625201

Molecular Weight (calculated)

40092.3 Da

IEP (calculated)

4.562

GRAVY (calculated)

-0.631

Length

368 amino acids

Sequence
(BLAST)

001: MCGGAILDDL REPELRRVTD RDIWQKKKPK RGGGGGRRSF AAEDHEDFEA DFADFEADSG DSDLELGEGA DDDVVEIKPF AAKGTFSGDG LSTMTTADYD
101: APVARSAKRK RKNQYRGIRK RPWGKWAAEI RDPQKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDAPAVGQKR RSGSASAKAP KSSVEQKPVV
201: KAPMTNLANT NASFYQSVNY PSNNPFVQHA NMPFVPAMNF TASVEDPIMN LHSDQGSNSF GCSDLAWEND TKTPDITSIA PISTIAEGDE SAFVNSNSNS
301: SMLPPVLENS AVDFTDGLTD LESYMRFLLD GGASDSVDSL LNLDGSQDVG SNMDLWSFDD MPIAGDFF

Best Arabidopsis Sequence Match ( AT3G14230.1 )
(BLAST)

001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGIYL
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF

Arabidopsis Description

RAP2-2Ethylene-responsive transcription factor RAP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.