CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0617000-02	Rice	nucleus	52.19	48.83
EES00666	Sorghum	nucleus	25.0	35.24
KRG97290	Soybean	nucleus	31.56	33.78
KRH69017	Soybean	nucleus	35.94	33.33
GSMUA_Achr10P...	Banana	nucleus	29.38	32.75
EER87998	Sorghum	nucleus	35.62	31.84
Solyc06g063070.2.1	Tomato	nucleus	36.25	31.18
KXG40036	Sorghum	nucleus	32.5	31.04
PGSC0003DMT400012547	Potato	nucleus	35.94	30.91
VIT_09s0002g00470.t01	Wine grape	nucleus	35.0	29.55
Solyc03g123500.2.1	Tomato	nucleus	35.31	29.27
PGSC0003DMT400023609	Potato	nucleus	35.31	28.97
KXG35689	Sorghum	nucleus, plastid	34.69	28.46
EES07642	Sorghum	nucleus	32.5	28.26
KRH06265	Soybean	nucleus	32.81	27.49
EES18078	Sorghum	nucleus	16.88	27.14
PGSC0003DMT400074248	Potato	nucleus	32.81	27.06
Solyc12g049560.1.1	Tomato	nucleus	31.88	26.42
KRH47694	Soybean	nucleus	32.19	26.28
EER97023	Sorghum	nucleus	17.5	24.67
KXG31168	Sorghum	nucleus	17.5	22.49
EES13952	Sorghum	nucleus	25.0	21.56
EER96855	Sorghum	mitochondrion, nucleus	18.75	20.41
OQU80635	Sorghum	nucleus	17.19	18.84
OQU80805	Sorghum	nucleus	15.62	16.61
OQU85019	Sorghum	nucleus	15.0	16.44
OQU82952	Sorghum	mitochondrion	16.25	15.81
OQU78803	Sorghum	nucleus	16.56	15.54
OQU81440	Sorghum	nucleus	19.38	12.5

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8079193	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XE21
InterPro:DNA-bd_dom_sf	ProteinID:EER99704.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KXG36690	ProteinID:KXG36690	ProteinID:KXG36690.1	ProteinID:KXG36691.1
ProteinID:KXG36692.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF73
SMART:SM00380	EnsemblPlantsGene:SORBI_3002G375400	SUPFAM:SSF54171	unigene:Sbi.9165	UniParc:UPI0001A83D33	RefSeq:XP_002463183.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:73281107..73286155

Molecular Weight (calculated)

35905.3 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.717

Length

320 amino acids

Sequence
(BLAST)

001: MCGGAILSDL YSPVRQKVTA NHLWTESGSS KSGKNWKRKS SWEFGEDDFE ADFEGFEDGD SEEDVDFVHE GQEFQTNSSN LVVGSNVHTA KVASRKRRTQ
101: YRGIRRRPWG KWAAEIRDPR KGVRVWLGTY STAEEAARAY DTAAWRIRGK KAKVNFPSAI TNPEKRRRGR VARPRKKIAS QETLKLNDAS DDHVISAGSS
201: TDDATAVKLE LPESASPPPM SSAWLDAFEL NQVNELSYLE VEETVGETRV TDTVFGNGEV RPADDFVYYD PFPDFVQLPY LEGNSYENID VLFNGDTVQE
301: GVNIGGLWSF DDVPMDHGVY

Best Arabidopsis Sequence Match ( AT1G53910.1 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.