CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045044_P001	Maize	nucleus, plastid	84.36	83.2
Os06t0194000-02	Rice	nucleus	64.53	63.81
TraesCS7A01G158000.1	Wheat	nucleus	60.89	61.76
TraesCS7D01G158500.1	Wheat	nucleus	60.61	61.13
TraesCS7B01G062200.1	Wheat	nucleus	60.34	60.85
HORVU7Hr1G032750.1	Barley	nucleus, plastid	61.45	56.41
EES07642	Sorghum	nucleus	56.7	55.16
GSMUA_Achr2P07300_001	Banana	nucleus	36.59	39.7
VIT_09s0002g00470.t01	Wine grape	nucleus	41.62	39.31
KRH69017	Soybean	nucleus	37.43	38.84
EES00666	Sorghum	nucleus	24.58	38.77
KRG97290	Soybean	nucleus	31.84	38.13
Solyc06g063070.2.1	Tomato	nucleus	38.55	37.1
Solyc03g123500.2.1	Tomato	nucleus	39.66	36.79
PGSC0003DMT400012547	Potato	nucleus	37.99	36.56
KXG35689	Sorghum	nucleus, plastid	39.66	36.41
PGSC0003DMT400023609	Potato	nucleus	39.66	36.41
KRH06265	Soybean	nucleus	38.27	35.86
KXG36690	Sorghum	nucleus	31.84	35.62
GSMUA_AchrUn_...	Banana	nucleus	37.15	35.56
KRH47694	Soybean	nucleus	38.83	35.46
Solyc12g049560.1.1	Tomato	nucleus	35.75	33.16
KXG40036	Sorghum	nucleus	30.73	32.84
PGSC0003DMT400074248	Potato	nucleus	35.2	32.47
EES18078	Sorghum	nucleus	16.48	29.65
EES13952	Sorghum	nucleus	26.82	25.88
EER97023	Sorghum	nucleus	15.92	25.11
KXG31168	Sorghum	nucleus	14.25	20.48
EER96855	Sorghum	mitochondrion, nucleus	16.76	20.41
OQU80635	Sorghum	nucleus	15.64	19.18
OQU80805	Sorghum	nucleus	14.8	17.61
OQU82952	Sorghum	mitochondrion	15.92	17.33
OQU78803	Sorghum	nucleus	16.48	17.3
OQU85019	Sorghum	nucleus	13.41	16.44
OQU81440	Sorghum	nucleus	17.6	12.7

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8065451	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5Z5Y3
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER87998	ProteinID:EER87998	ProteinID:EER87998.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF44	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G071700	SUPFAM:SSF54171
unigene:Sbi.14388	UniParc:UPI0001A8920F	RefSeq:XP_002436631.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:5791147..5794563

Molecular Weight (calculated)

39516.1 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.603

Length

358 amino acids

Sequence
(BLAST)

001: MCGGAILSDI IPPPPRRVTA GHLWPESKKP RRGAGAGRRR AGPPVEEEEE EEDFEADFEV FEVESGESEL ESEDEAKPFA APRTRSALPR DGLNTSAVVV
101: DGPAANSVKR KRKNQFRGIR RRPWGKWAAE IRDPRKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDEVSTIPQ KHRAGPTPLK VPEMDFEEKP
201: IIKPAVNNMT NSNAYHYPVV DHNIPEPFMH TQNMSFAPFV NSAAPIQEPF VNLSSDQGSN SFSCSDFSLE NDTRTPDITS VVVGESAFVQ NTGPAVVPPL
301: MGNASVDLTE LDPYMNFLMD SGSEDSINTL LSCDGSQDVV SNMDLWSFDD MPMSAGFY

Best Arabidopsis Sequence Match ( AT1G53910.3 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.