CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027925_P001	Maize	nucleus	80.6	79.41
TraesCS4B01G299400.1	Wheat	nucleus	55.82	59.74
TraesCS4A01G005600.1	Wheat	nucleus, plastid	55.22	58.54
TraesCS4D01G298400.1	Wheat	nucleus	54.03	57.46
TraesCS4B01G299500.1	Wheat	nucleus	54.03	57.28
HORVU4Hr1G077310.2	Barley	nucleus	53.73	52.63
EES00666	Sorghum	nucleus	24.18	35.68
KXG36690	Sorghum	nucleus	31.04	32.5
EER87998	Sorghum	nucleus	32.84	30.73
EES07642	Sorghum	nucleus	32.24	29.35
KXG35689	Sorghum	nucleus, plastid	32.24	27.69
Os03t0183000-02	Rice	plastid	25.07	25.15
EES18078	Sorghum	nucleus	14.93	25.13
KXG31168	Sorghum	nucleus	16.42	22.09
EER97023	Sorghum	nucleus	14.93	22.03
EER96855	Sorghum	mitochondrion, nucleus	17.31	19.73
OQU82952	Sorghum	mitochondrion	18.51	18.84
OQU80635	Sorghum	nucleus	16.42	18.84
OQU78803	Sorghum	nucleus	18.51	18.18
OQU80805	Sorghum	nucleus	15.82	17.61
EES13952	Sorghum	nucleus	19.4	17.52
OQU85019	Sorghum	nucleus	13.73	15.75
OQU81440	Sorghum	nucleus	18.81	12.7

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	UniProt:A0A1B6QQ35	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG40036	ProteinID:KXG40036	ProteinID:KXG40036.1	ProteinID:KXG40037.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF63	SMART:SM00380	EnsemblPlantsGene:SORBI_3001G481400	SUPFAM:SSF54171
UniParc:UPI0002207081	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:75312217..75313912

Molecular Weight (calculated)

36660.3 Da

IEP (calculated)

5.794

GRAVY (calculated)

-0.669

Length

335 amino acids

Sequence
(BLAST)

001: MCGGAILAEL IPPTRRVAPK PVTEGHLWPA SSKKAGSGSN KRHHHEYADD DDFEAAFEEF DDDFDVHEDD EDHPDHFVFS SKSAFSPAHD GRRDARAAAS
101: QRTKRGRRHF HGIRQRPWGK WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAASA RPRARRGKGN PRTAPKPAAQ AQPALLLRGE
201: KGLEGVAVKP ETTMDMFDVG SFFDMTFPTF PAAPAAAMES SFAGSSATSE TRSPGKKLRY DDGDSSEGSG CGSALELADE LAFDPFMLLQ MPYSGGYDSL
301: DGLFAAEAVQ QDVNNDMNGV SLWSFDEFPV DGYVF

Best Arabidopsis Sequence Match ( AT1G72360.2 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.