Factsheet for TraesCS4B01G299500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G299400.1	Wheat	nucleus	78.48	79.23
TraesCS4A01G005600.1	Wheat	nucleus, plastid	78.8	78.8
TraesCS4D01G298400.1	Wheat	nucleus	78.48	78.73
HORVU4Hr1G077310.2	Barley	nucleus	79.11	73.1
KXG40036	Sorghum	nucleus	57.28	54.03
Zm00001d027925_P001	Maize	nucleus	54.75	50.88
TraesCS5B01G315500.2	Wheat	nucleus	21.52	32.38
TraesCS6B01G126700.1	Wheat	nucleus, plastid	22.15	29.66
TraesCS6B01G375400.1	Wheat	nucleus	34.49	27.39
TraesCS7B01G062200.1	Wheat	nucleus	30.06	26.76
TraesCS7B01G324400.1	Wheat	nucleus	26.27	26.6
TraesCS5B01G214400.1	Wheat	nucleus	32.28	26.42
TraesCS6B01G350100.1	Wheat	nucleus	15.19	25.67
TraesCS6B01G350000.1	Wheat	nucleus	14.87	25.0
TraesCS1B01G243200.1	Wheat	nucleus	14.56	24.86
TraesCS7B01G283900.1	Wheat	nucleus	21.84	24.73
TraesCS6B01G126600.1	Wheat	nucleus	28.48	24.59
TraesCS7B01G162100.1	Wheat	plastid	17.41	24.55
TraesCS6B01G125900.1	Wheat	nucleus	29.43	24.16
TraesCS7B01G278700.1	Wheat	nucleus	27.22	22.45
TraesCS2B01G304800.1	Wheat	nucleus	17.72	22.13
TraesCS1B01G389700.1	Wheat	nucleus	17.41	21.91
TraesCS5B01G236900.1	Wheat	nucleus	16.46	21.49
Os03t0183000-02	Rice	plastid	22.15	20.96
TraesCS6B01G350400.1	Wheat	nucleus	16.77	20.95
TraesCS6B01G427100.1	Wheat	nucleus	21.52	20.54
TraesCS1B01G389800.1	Wheat	nucleus	16.46	20.08
TraesCS1B01G389900.1	Wheat	nucleus	16.14	19.1
TraesCS5B01G118200.1	Wheat	nucleus	19.62	18.18

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF63	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G299500	EnsemblPlants:TraesCS4B01G299500.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:585963224..585964442

Molecular Weight (calculated)

34056.7 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.458

Length

316 amino acids

Sequence
(BLAST)

001: MCGGAILAKL IPPTPPSAGR APKQVAAGGV SPKKGGMNKT HHSSTPDVDD FEAAFEDFDD DFHLQAEEDG DDHVVFASKP AFSPAYDDGR AAQAASRKKS
101: VRRLHGIRQR PWGKWAAEIR DPHKGTRVWL GTFDTADDAA RAYDVAAHRL RGSKAKVNFP NGTRAGARLQ RASRRTASKR QCPPARTTAY SAAHAQKERD
201: AMVAKPELME SFDMDAFVDL TTAFTTLPPV MASSFADTGA KKPMVDEDSS DGSGGDAMLG FDPFMLFQLP CSDTYESIDS LFAGDAVIQD ALGVDSGMEG
301: VSLWSFEEFP MDSAIF

Best Arabidopsis Sequence Match ( AT1G72360.3 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.