Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G084200.1 | Wheat | nucleus | 90.44 | 87.34 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 54.64 | 84.75 |
| TraesCSU01G183700.1 | Wheat | nucleus | 62.84 | 80.99 |
| TraesCS6A01G097500.1 | Wheat | nucleus | 79.78 | 80.22 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 76.23 | 70.1 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 72.13 | 68.57 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 52.19 | 68.46 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 54.37 | 62.19 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 52.19 | 61.22 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 62.57 | 59.79 |
| EES07642 | Sorghum | nucleus | 54.92 | 54.62 |
| Zm00001d052087_P001 | Maize | nucleus | 53.55 | 54.29 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 48.36 | 53.47 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 45.63 | 47.04 |
| Zm00001d018305_P001 | Maize | nucleus | 35.79 | 46.45 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 37.7 | 36.41 |
| KRG97290 | Soybean | nucleus | 28.69 | 35.12 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 19.95 | 34.76 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 30.6 | 33.94 |
| KRH69017 | Soybean | nucleus | 31.97 | 33.91 |
| PGSC0003DMT400012547 | Potato | nucleus | 33.88 | 33.33 |
| Solyc06g063070.2.1 | Tomato | nucleus | 33.88 | 33.33 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 33.61 | 31.87 |
| Solyc03g123500.2.1 | Tomato | nucleus | 33.61 | 31.87 |
| KRH06265 | Soybean | nucleus | 32.24 | 30.89 |
| Solyc12g049560.1.1 | Tomato | nucleus | 32.51 | 30.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.42 | 30.75 |
| PGSC0003DMT400023609 | Potato | nucleus | 32.51 | 30.51 |
| PGSC0003DMT400074248 | Potato | nucleus | 31.97 | 30.15 |
| KRH47694 | Soybean | nucleus | 32.24 | 30.1 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 25.68 | 30.03 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 24.59 | 28.48 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 14.21 | 28.11 |
| TraesCS7B01G162100.1 | Wheat | plastid | 14.75 | 24.11 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 12.02 | 23.53 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 11.75 | 22.87 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 15.57 | 22.53 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 15.3 | 22.13 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 15.57 | 22.01 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 15.03 | 21.91 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 15.57 | 21.35 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 13.39 | 20.25 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 15.3 | 16.42 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6B01G126600 | EnsemblPlants:TraesCS6B01G126600.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:121958975..121961254
Molecular Weight (calculated)
40090.7 Da
IEP (calculated)
4.755
GRAVY (calculated)
-0.587
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAPLADV KVPTVTRRMT KEALWPEKKK PRHGGSGGQR VMGLGGRRGP GLDDNEEDFE ADSGDSDLDL ERSMVDEKDG DDEVSEIKSF AAVKSSLSQG
101: FDGPSAKRKR KNQFRGIRQR PWGKWAAKIR DPSKGARVWL GTFNSAEEAA RAYDVEARRI RGNKAKVNFP KEPTVPQKRR ARPAAPKAPK QSVAHEPSVM
201: SSINNLANPN AFIYPSADFA SNQPLALPDN VSFVPAMNFV APVEAFVMNP YSDQGSNSFG CSDLDWDYDT KTPDIPFIAP ISTIAEEAES ALAQSNAYNS
301: VVIAEASESA LAQSNTYNSV VPRVMENNDV DFEAWTRFLM DDSVDEPIDS LLNFNVPQDV VVNMDL
101: FDGPSAKRKR KNQFRGIRQR PWGKWAAKIR DPSKGARVWL GTFNSAEEAA RAYDVEARRI RGNKAKVNFP KEPTVPQKRR ARPAAPKAPK QSVAHEPSVM
201: SSINNLANPN AFIYPSADFA SNQPLALPDN VSFVPAMNFV APVEAFVMNP YSDQGSNSFG CSDLDWDYDT KTPDIPFIAP ISTIAEEAES ALAQSNAYNS
301: VVIAEASESA LAQSNTYNSV VPRVMENNDV DFEAWTRFLM DDSVDEPIDS LLNFNVPQDV VVNMDL
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.