Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G183700.1 | Wheat | nucleus | 70.88 | 90.85 |
| TraesCS6D01G085000.1 | Wheat | nucleus | 75.0 | 84.26 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 80.22 | 79.78 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 82.69 | 79.42 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 48.9 | 75.42 |
| TraesCS6A01G097700.1 | Wheat | nucleus | 67.03 | 67.4 |
| TraesCS6A01G343300.1 | Wheat | nucleus | 72.25 | 66.08 |
| TraesCS7A01G377400.1 | Wheat | nucleus | 55.49 | 59.41 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 51.1 | 58.12 |
| Zm00001d052087_P001 | Maize | nucleus | 49.45 | 49.86 |
| EES07642 | Sorghum | nucleus | 50.0 | 49.46 |
| TraesCS7A01G158000.1 | Wheat | nucleus | 43.13 | 44.48 |
| Zm00001d018305_P001 | Maize | nucleus | 31.32 | 40.43 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 36.81 | 35.36 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 19.23 | 34.31 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 29.67 | 32.73 |
| KRG97290 | Soybean | nucleus | 26.65 | 32.44 |
| KRH69017 | Soybean | nucleus | 30.22 | 31.88 |
| TraesCS5A01G215900.1 | Wheat | nucleus | 32.69 | 31.57 |
| Solyc06g063070.2.1 | Tomato | nucleus | 31.32 | 30.65 |
| PGSC0003DMT400012547 | Potato | nucleus | 31.04 | 30.38 |
| TraesCS4A01G005600.1 | Wheat | nucleus, plastid | 26.1 | 30.06 |
| KRH06265 | Soybean | nucleus | 31.32 | 29.84 |
| Solyc12g049560.1.1 | Tomato | nucleus | 31.59 | 29.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.49 | 29.68 |
| Solyc03g123500.2.1 | Tomato | nucleus | 31.32 | 29.53 |
| PGSC0003DMT400074248 | Potato | nucleus | 31.32 | 29.38 |
| KRH47694 | Soybean | nucleus | 31.32 | 29.08 |
| PGSC0003DMT400023609 | Potato | nucleus | 30.77 | 28.72 |
| TraesCS1A01G231200.1 | Wheat | nucleus | 13.19 | 26.67 |
| TraesCS6A01G319500.1 | Wheat | nucleus | 12.64 | 24.47 |
| TraesCS7A01G264100.1 | Wheat | plastid | 15.11 | 24.23 |
| TraesCS1A01G370600.1 | Wheat | nucleus | 16.21 | 23.05 |
| TraesCS6A01G319600.1 | Wheat | nucleus | 15.38 | 22.67 |
| TraesCS2A01G288000.1 | Wheat | nucleus | 15.38 | 22.31 |
| TraesCS1A01G370400.1 | Wheat | nucleus | 15.38 | 21.54 |
| TraesCS5A01G238400.1 | Wheat | nucleus | 14.01 | 21.16 |
| TraesCS1A01G370700.1 | Wheat | nucleus | 15.38 | 21.13 |
| TraesCS5A01G112600.1 | Wheat | nucleus | 15.11 | 16.77 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6A01G097500 | EnsemblPlants:TraesCS6A01G097500.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:64678719..64680638
Molecular Weight (calculated)
39850.5 Da
IEP (calculated)
4.694
GRAVY (calculated)
-0.534
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGASLADV KVPTVTWKVT KAALCPKKKK PRHGSNGGRC FTGLGGRMGP DVDDNEEDFE AELEVFEVDF GDSDVELGRT RVDEKDDDNE VVEIKSFAAA
101: KSSLSQGFDG PSAKRKRKSQ FRGIRQRPWG KWAAEIRDPS KGARVWLGTF NSAEEAARAY DVEARRIRGN KAKVNFPKEP IVPQKRRARP GAPKAPKLSV
201: ASEPSVMPSV NNLSNPNAFI YPSANFASNQ PLALPDNLSF VPIMNSDGPV EASVMNQYSD QGINSFSFSD LEWDYNTKNL DIPSIAPIST ITEGAEYALA
301: QSNAYNSVVI PEGAESALAQ SNTYNLVVPH VMENNGVDFD AWPRFLMDDE VDEPIDSLLN FDVP
101: KSSLSQGFDG PSAKRKRKSQ FRGIRQRPWG KWAAEIRDPS KGARVWLGTF NSAEEAARAY DVEARRIRGN KAKVNFPKEP IVPQKRRARP GAPKAPKLSV
201: ASEPSVMPSV NNLSNPNAFI YPSANFASNQ PLALPDNLSF VPIMNSDGPV EASVMNQYSD QGINSFSFSD LEWDYNTKNL DIPSIAPIST ITEGAEYALA
301: QSNAYNSVVI PEGAESALAQ SNTYNLVVPH VMENNGVDFD AWPRFLMDDE VDEPIDSLLN FDVP
001: MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.