Factsheet for TraesCS6A01G319500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G299000.1	Wheat	nucleus	92.55	92.55
TraesCS6B01G350000.1	Wheat	nucleus	91.49	91.49
TraesCS6B01G350100.1	Wheat	nucleus	90.43	90.91
TraesCS6D01G298700.1	Wheat	nucleus	88.83	89.3
HORVU6Hr1G078520.1	Barley	nucleus	85.11	85.56
TraesCS6A01G319600.1	Wheat	nucleus	70.74	53.85
Os02t0764700-01	Rice	nucleus	55.85	43.39
KXG31168	Sorghum	nucleus	57.45	43.37
Zm00001d052167_P001	Maize	nucleus	51.6	42.17
Zm00001d018158_P001	Maize	nucleus	50.0	39.83
TraesCS5A01G238400.1	Wheat	nucleus	42.02	32.78
TraesCS1A01G370600.1	Wheat	nucleus	43.62	32.03
TraesCS1A01G370700.1	Wheat	nucleus	44.15	31.32
TraesCS1A01G370400.1	Wheat	nucleus	40.96	29.62
TraesCS7A01G264100.1	Wheat	plastid	28.19	23.35
TraesCS1A01G231200.1	Wheat	nucleus	21.81	22.78
TraesCS5A01G314600.1	Wheat	nucleus	21.81	20.1
TraesCS5A01G112600.1	Wheat	nucleus	33.51	19.21
TraesCS2A01G288000.1	Wheat	nucleus	25.53	19.12
TraesCS4A01G005600.1	Wheat	nucleus, plastid	25.53	15.19
TraesCS6A01G097700.1	Wheat	nucleus	25.53	13.26
TraesCS7A01G377400.1	Wheat	nucleus	23.94	13.24
TraesCS6A01G097500.1	Wheat	nucleus	24.47	12.64
TraesCS6A01G343300.1	Wheat	nucleus	26.6	12.56
TraesCS5A01G215900.1	Wheat	nucleus	25.0	12.47
TraesCS7A01G158000.1	Wheat	nucleus	22.87	12.18

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF80	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6A01G319500	EnsemblPlants:TraesCS6A01G319500.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6A:+:554855524..554856359

Molecular Weight (calculated)

19731.0 Da

IEP (calculated)

8.231

GRAVY (calculated)

-0.140

Length

188 amino acids

Sequence
(BLAST)

001: MAPRLERGGR GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS CGVDGCIGCM FVAAAATADS SSGGEECSAA SFVKDGGVGK
101: ITRRRSRSKF GGVRQRSWGK WAAEIRDPHR AVRQWLGTFD TAVDAARAYD LAALEFRGHR ARLNFPDAAA SSSSAASVSD SSWTAAQS

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.