Factsheet for TraesCS6D01G299000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G350000.1	Wheat	nucleus	95.21	95.21
TraesCS6B01G350100.1	Wheat	nucleus	94.68	95.19
TraesCS6A01G319500.1	Wheat	nucleus	92.55	92.55
TraesCS6D01G298700.1	Wheat	nucleus	88.3	88.77
HORVU6Hr1G078520.1	Barley	nucleus	86.7	87.17
TraesCS6D01G298800.1	Wheat	nucleus	73.4	62.73
TraesCS6D01G299100.1	Wheat	nucleus, plastid	74.47	47.14
KXG31168	Sorghum	nucleus	59.04	44.58
Os02t0764700-01	Rice	nucleus	56.91	44.21
Zm00001d052167_P001	Maize	nucleus	52.13	42.61
Zm00001d018158_P001	Maize	nucleus	51.6	41.1
TraesCS5D01G245300.1	Wheat	nucleus	43.62	33.33
TraesCS1D01G376800.1	Wheat	nucleus	43.62	30.71
TraesCS1D01G376600.1	Wheat	nucleus	43.09	30.57
TraesCS1D01G376700.1	Wheat	nucleus	41.49	29.32
TraesCS1D01G376500.1	Wheat	nucleus	39.89	27.68
TraesCS7D01G265000.1	Wheat	plastid	28.72	24.11
TraesCS1D01G230900.1	Wheat	nucleus	22.34	22.83
TraesCS5D01G320800.1	Wheat	nucleus	22.34	21.21
TraesCS2D01G286300.1	Wheat	nucleus	27.13	20.16
TraesCS5D01G129400.1	Wheat	nucleus	34.57	19.88
TraesCS4D01G298400.1	Wheat	nucleus	25.53	15.24
TraesCS6D01G085000.1	Wheat	nucleus	22.34	12.96
TraesCS7D01G373700.1	Wheat	nucleus	24.47	12.81
TraesCS6D01G324200.1	Wheat	nucleus	26.6	12.56
TraesCS7D01G416300.1	Wheat	nucleus	21.81	12.39
TraesCS6D01G084900.1	Wheat	nucleus	25.53	12.34
TraesCS5D01G223700.1	Wheat	nucleus	25.0	12.34
TraesCS7D01G378200.1	Wheat	nucleus	18.09	12.19
TraesCS7D01G158500.1	Wheat	nucleus	22.34	11.83
TraesCS6D01G084200.1	Wheat	nucleus	23.4	11.61

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF80	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G299000	EnsemblPlants:TraesCS6D01G299000.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:409584187..409584753

Molecular Weight (calculated)

19633.1 Da

IEP (calculated)

9.122

GRAVY (calculated)

-0.138

Length

188 amino acids

Sequence
(BLAST)

001: MAPRLERGGS GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS CGVDGCIGCM FAAAAAPAGS SSEGEGCSAA SFVKGGGVGK
101: ITRRRSRSKF RGVRQRSWGK WAAEIRDPHR AVRKWLGTFD TAVDAARAYD LAALEFRGHR ARLNFPDAAA TPPSSASVSD SSWAAAQS

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.