Factsheet for TraesCS6D01G299100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G350400.1	Wheat	nucleus	79.46	93.28
TraesCS6A01G319600.1	Wheat	nucleus	75.42	90.69
TraesCS6D01G299000.1	Wheat	nucleus	47.14	74.47
TraesCS6D01G298700.1	Wheat	nucleus	45.79	72.73
TraesCS6D01G298800.1	Wheat	nucleus	49.49	66.82
KXG31168	Sorghum	nucleus	54.88	65.46
HORVU6Hr1G078510.5	Barley	nucleus	56.23	64.98
Os02t0764700-01	Rice	nucleus	50.51	61.98
Zm00001d052167_P001	Maize	nucleus	47.81	61.74
Zm00001d018158_P001	Maize	nucleus	46.8	58.9
TraesCS5D01G245300.1	Wheat	nucleus	32.32	39.02
TraesCS1D01G376800.1	Wheat	nucleus	33.67	37.45
TraesCS1D01G376600.1	Wheat	nucleus	31.65	35.47
TraesCS1D01G376700.1	Wheat	nucleus	31.31	34.96
TraesCS1D01G376500.1	Wheat	nucleus	30.3	33.21
TraesCS7D01G265000.1	Wheat	plastid	21.21	28.12
TraesCS1D01G230900.1	Wheat	nucleus	17.17	27.72
TraesCS5D01G320800.1	Wheat	nucleus	17.85	26.77
TraesCS5D01G129400.1	Wheat	nucleus	24.92	22.63
TraesCS2D01G286300.1	Wheat	nucleus	18.18	21.34
TraesCS4D01G298400.1	Wheat	nucleus	18.52	17.46
TraesCS6D01G085000.1	Wheat	nucleus	17.85	16.36
TraesCS7D01G373700.1	Wheat	nucleus	19.19	15.88
TraesCS6D01G324200.1	Wheat	nucleus	20.88	15.58
TraesCS7D01G378200.1	Wheat	nucleus	14.48	15.41
TraesCS6D01G084200.1	Wheat	nucleus	18.86	14.78
TraesCS7D01G158500.1	Wheat	nucleus	17.17	14.37
TraesCS6D01G084900.1	Wheat	nucleus	18.52	14.14
TraesCS5D01G223700.1	Wheat	nucleus	17.85	13.91
TraesCS7D01G416300.1	Wheat	nucleus	15.15	13.6

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF80	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G299100	EnsemblPlants:TraesCS6D01G299100.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:409655084..409655977

Molecular Weight (calculated)

31594.9 Da

IEP (calculated)

9.976

GRAVY (calculated)

-0.586

Length

297 amino acids

Sequence
(BLAST)

001: MAATGPNYLK HQWDHDNASR PPQHTNARSP KTFSRHRPHL GLHVAMVPRL ERGGAGGFQL PNSEQENSLF LRALISVVSG DTAAPALQPE LSTPPFAAPA
101: PAAAAAACAR CGVDGCPGCE FAAAAAATTG SSSEGEECSA ASFVKNGGVG KRRAGGGGSK FRGVRQRPWG KWAAEIRDPH RAVRKWLGTF DTAAEAARAY
201: DVAALEFRGH RAKLNFPAGA TSASASASSW AAAQPRPQRQ QRPESPREKC GSNASSPVHV PRLPEQGRPV AREQEIWDGL HEIMMMDDGN FWSNPKP

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.