Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G298800.1 | Wheat | nucleus | 60.31 | 70.45 |
| HORVU6Hr1G078520.1 | Barley | nucleus | 47.86 | 65.78 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 64.59 | 65.61 |
| TraesCS6A01G319600.1 | Wheat | nucleus | 62.26 | 64.78 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 64.98 | 56.23 |
| KXG31168 | Sorghum | nucleus | 49.03 | 50.6 |
| Os02t0764700-01 | Rice | nucleus | 47.08 | 50.0 |
| Zm00001d018158_P001 | Maize | nucleus | 42.8 | 46.61 |
| Zm00001d052167_P001 | Maize | nucleus | 40.86 | 45.65 |
| HORVU5Hr1G068450.1 | Barley | nucleus | 31.91 | 30.6 |
| HORVU1Hr1G082310.1 | Barley | nucleus | 30.74 | 29.92 |
| HORVU2Hr1G071270.4 | Barley | nucleus | 16.73 | 24.29 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 14.79 | 20.43 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 24.12 | 19.75 |
| HORVU4Hr1G077310.2 | Barley | nucleus | 19.46 | 14.62 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 17.9 | 14.38 |
| HORVU0Hr1G021820.1 | Barley | nucleus | 15.56 | 13.99 |
| HORVU6Hr1G082880.1 | Barley | nucleus | 19.84 | 13.82 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 15.95 | 13.71 |
| HORVU6Hr1G064370.1 | Barley | nucleus | 14.4 | 12.76 |
| HORVU6Hr1G083520.2 | Barley | nucleus, plastid | 15.56 | 12.38 |
| HORVU7Hr1G090440.1 | Barley | nucleus | 17.9 | 12.3 |
| HORVU6Hr1G017530.1 | Barley | nucleus | 18.29 | 12.02 |
| HORVU6Hr1G082840.1 | Barley | nucleus | 14.4 | 11.86 |
| HORVU6Hr1G083530.1 | Barley | nucleus | 17.12 | 11.11 |
| HORVU6Hr1G082770.1 | Barley | nucleus | 16.73 | 11.05 |
| HORVU6Hr1G082820.1 | Barley | nucleus | 17.12 | 10.89 |
| HORVU5Hr1G062940.1 | Barley | nucleus, plastid | 16.73 | 10.57 |
| HORVU7Hr1G032750.1 | Barley | nucleus, plastid | 15.95 | 10.51 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.2 | UniProt:A0A287UTF2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G078510 | EnsemblPlants:HORVU6Hr1G078510.5 |
| InterPro:IPR001471 | InterPro:IPR036955 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF80 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B4836F8 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr6H:-:534759255..534760860
Molecular Weight (calculated)
26768.4 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.233
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRLERGGG GFQLPNSDQE NSLFLRALIS VVSGDTDTVV PTLHLELSPP PFAATPAAGT PAAAAGCVGV DGCHGSYLAA AEAMAGSSSE REGCSAASFL
101: KDGGVGKITG KRRGGKFGGV RQRPWGRTAA EVGDPHPVMR KWLGTFDAAA EAATACAHDV AATLAFRGHR ARLNFLAAAA SSSASSSASG SSRAIAQRQH
201: LPEIIQENCR SNASSSAYVP QLPEQGRPVA REHEIWDELQ EIMMMDGTNF SVTNLHE
101: KDGGVGKITG KRRGGKFGGV RQRPWGRTAA EVGDPHPVMR KWLGTFDAAA EAATACAHDV AATLAFRGHR ARLNFLAAAA SSSASSSASG SSRAIAQRQH
201: LPEIIQENCR SNASSSAYVP QLPEQGRPVA REHEIWDELQ EIMMMDGTNF SVTNLHE
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.