Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G288000.1 Wheat nucleus 77.4 54.58
TraesCS2B01G304800.1 Wheat nucleus 77.97 54.55
TraesCS2D01G286300.1 Wheat nucleus 76.84 53.75
Os04t0398000-02 Rice nucleus 59.89 39.55
GSMUA_Achr10P... Banana nucleus 46.89 36.56
AT5G13330.1 Thale cress nucleus 38.98 32.55
VIT_01s0150g00120.t01 Wine grape nucleus, plastid 42.94 32.07
GSMUA_Achr6P08140_001 Banana nucleus 49.72 31.65
CDX69647 Canola nucleus 36.16 29.49
Bra008835.1-P Field mustard nucleus 35.59 29.03
KRH01504 Soybean nucleus 38.98 28.51
GSMUA_Achr2P21430_001 Banana nucleus, plastid 46.33 28.18
CDY09787 Canola nucleus 35.03 27.8
HORVU6Hr1G078520.1 Barley nucleus 28.81 27.27
CDX78517 Canola nucleus 39.55 27.13
Bra006195.1-P Field mustard nucleus 38.98 26.74
CDX70498 Canola nucleus 38.98 26.74
HORVU1Hr1G058940.4 Barley nucleus, plastid 27.68 26.34
Bra023404.1-P Field mustard nucleus 36.72 26.1
CDX85656 Canola nucleus 36.72 26.1
CDX91131 Canola nucleus 36.72 25.59
KRH45195 Soybean nucleus 38.98 24.91
HORVU1Hr1G082310.1 Barley nucleus 35.59 23.86
HORVU5Hr1G068450.1 Barley nucleus 31.64 20.9
HORVU5Hr1G036590.2 Barley nucleus 36.16 20.38
OQU81440 Sorghum nucleus 55.93 19.96
HORVU6Hr1G078510.5 Barley nucleus 24.29 16.73
HORVU5Hr1G080790.1 Barley nucleus 27.68 16.39
HORVU0Hr1G021820.1 Barley nucleus 25.99 16.08
HORVU4Hr1G077310.2 Barley nucleus 29.94 15.5
HORVU6Hr1G076090.2 Barley nucleus 27.68 15.31
HORVU6Hr1G082880.1 Barley nucleus 29.38 14.09
HORVU6Hr1G083530.1 Barley nucleus 29.94 13.38
HORVU6Hr1G082770.1 Barley nucleus 28.81 13.11
HORVU6Hr1G082820.1 Barley nucleus 29.38 12.87
HORVU7Hr1G090440.1 Barley nucleus 27.12 12.83
HORVU7Hr1G032750.1 Barley nucleus, plastid 27.12 12.31
HORVU6Hr1G017530.1 Barley nucleus 27.12 12.28
HORVU6Hr1G083520.2 Barley nucleus, plastid 21.47 11.76
HORVU5Hr1G062940.1 Barley nucleus, plastid 26.55 11.55
HORVU6Hr1G082840.1 Barley nucleus 20.34 11.54
HORVU6Hr1G064370.1 Barley nucleus 18.08 11.03
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfncoils:CoilInterPro:DNA-bd_dom_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:HORVU2Hr1G071270
EnsemblPlants:HORVU2Hr1G071270.4InterPro:IPR001471InterPro:IPR036955PFAM:PF00847PRINTS:PR00367PFscan:PS51032
PANTHER:PTHR31190PANTHER:PTHR31190:SF73SMART:SM00380SUPFAM:SSF54171SEG:seg:
Description
No Description!
Coordinates
chrchr2H:+:507785971..507787466
Molecular Weight (calculated)
15956.9 Da
IEP (calculated)
10.492
GRAVY (calculated)
-0.558
Length
177 amino acids
Sequence
(BLAST)
001: MVSALSHVIR ATPDQEPAYY PAGPAAVSRE QQHQHAAAIA EEQGRKRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFDT AEDAAIAYDE AALRFKGTKA
101: KLNFPERVQG RTDLGFVVTR GIPDRLQQQQ HYPAAVGAPA MRXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXT
Best Arabidopsis Sequence Match ( AT5G13330.1 )
(BLAST)
001: MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG
101: PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK
201: NYGYNYYNYP RE
Arabidopsis Description
ERF113Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.