Factsheet for HORVU6Hr1G082770.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
TargetP:	secretory
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G083530.1	Barley	nucleus	87.66	86.11
HORVU6Hr1G082820.1	Barley	nucleus	85.6	82.43
HORVU6Hr1G076090.2	Barley	nucleus	57.33	69.69
HORVU6Hr1G082880.1	Barley	nucleus	52.44	55.28
HORVU0Hr1G021820.1	Barley	nucleus	38.3	52.1
HORVU6Hr1G064370.1	Barley	nucleus	38.82	52.07
HORVU6Hr1G083520.2	Barley	nucleus, plastid	42.93	51.7
HORVU6Hr1G082840.1	Barley	nucleus	40.62	50.64
HORVU6Hr1G017530.1	Barley	nucleus	50.9	50.64
HORVU7Hr1G090440.1	Barley	nucleus	47.3	49.2
HORVU7Hr1G032750.1	Barley	nucleus, plastid	36.76	36.67
HORVU2Hr1G071270.4	Barley	nucleus	13.11	28.81
HORVU1Hr1G058940.4	Barley	nucleus, plastid	13.11	27.42
HORVU5Hr1G062940.1	Barley	nucleus, plastid	26.74	25.55
HORVU4Hr1G077310.2	Barley	nucleus	22.36	25.44
HORVU6Hr1G078520.1	Barley	nucleus	11.05	22.99
HORVU5Hr1G080790.1	Barley	nucleus	17.22	22.41
HORVU5Hr1G068450.1	Barley	nucleus	14.4	20.9
HORVU1Hr1G082310.1	Barley	nucleus	13.37	19.7
HORVU5Hr1G036590.2	Barley	nucleus	14.14	17.52
HORVU6Hr1G078510.5	Barley	nucleus	11.05	16.73

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A287UXS4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G082770	EnsemblPlants:HORVU6Hr1G082770.1
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF44	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B47B30A	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:549313743..549319097

Molecular Weight (calculated)

43885.2 Da

IEP (calculated)

9.232

GRAVY (calculated)

-0.504

Length

389 amino acids

Sequence
(BLAST)

001: PLPRFIKNFA KLPIPARFLF LNDYDEALAV ICRGVVVENI KTLIVAEVLK WLEKKRSRDK RHFLGHIKFG IGLEMEKEWE EFLVDSTDSD LDLGHDGVVE
101: EDYNDDVVEI KPFVSISRSL SKDDLCTMPT GGFDSPAQRS AKRKRKTHYK GIRQRPWGKW VAEIRDPIKG VRVWLGTFNS AEEAARAYDV AARRIRGKKA
201: KLNFPEDRTF AQKSRAPPTA PEVPKPRTSR EHIFVPAVNN LGNRSSFVYP SASFASKHPV VQLDHVSMSS VAPVEARVTN MYSDRGTNSF GCSDLGWNYH
301: TKAPHISSTT RISTIVEGDG SLHVKNNTNN LMVPHVMENN AANFEPWMRY LMDNSVDEMI DSLLNFDVPQ DSIGNISKGT KPSISGQRE

Best Arabidopsis Sequence Match ( AT1G72360.1 )
(BLAST)

001: MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.