Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G082880.1 | Barley | nucleus | 73.66 | 78.05 |
| TraesCS6A01G097700.1 | Wheat | nucleus | 67.52 | 72.93 |
| HORVU0Hr1G021820.1 | Barley | nucleus | 52.69 | 72.03 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 71.36 | 71.72 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 69.31 | 70.39 |
| HORVU7Hr1G090440.1 | Barley | nucleus | 66.75 | 69.79 |
| HORVU6Hr1G082840.1 | Barley | nucleus | 51.41 | 64.42 |
| HORVU6Hr1G083520.2 | Barley | nucleus, plastid | 53.2 | 64.4 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 52.43 | 64.06 |
| HORVU6Hr1G064370.1 | Barley | nucleus | 47.31 | 63.79 |
| EES07642 | Sorghum | nucleus | 57.8 | 61.41 |
| Zm00001d052087_P001 | Maize | nucleus | 56.01 | 60.66 |
| Zm00001d018305_P001 | Maize | nucleus | 37.85 | 52.48 |
| HORVU6Hr1G083530.1 | Barley | nucleus | 51.66 | 51.01 |
| HORVU6Hr1G082770.1 | Barley | nucleus | 50.64 | 50.9 |
| HORVU7Hr1G032750.1 | Barley | nucleus, plastid | 48.08 | 48.21 |
| HORVU6Hr1G082820.1 | Barley | nucleus | 49.36 | 47.77 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 40.66 | 41.95 |
| KRG97290 | Soybean | nucleus | 31.46 | 41.14 |
| KRH69017 | Soybean | nucleus | 34.78 | 39.42 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 32.23 | 38.18 |
| Solyc06g063070.2.1 | Tomato | nucleus | 35.81 | 37.63 |
| PGSC0003DMT400012547 | Potato | nucleus | 35.81 | 37.63 |
| Solyc03g123500.2.1 | Tomato | nucleus | 36.32 | 36.79 |
| PGSC0003DMT400023609 | Potato | nucleus | 36.06 | 36.15 |
| KRH06265 | Soybean | nucleus | 35.04 | 35.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.99 | 34.49 |
| KRH47694 | Soybean | nucleus | 34.53 | 34.44 |
| Solyc12g049560.1.1 | Tomato | nucleus | 32.48 | 32.9 |
| PGSC0003DMT400074248 | Potato | nucleus | 32.48 | 32.73 |
| HORVU5Hr1G062940.1 | Barley | nucleus, plastid | 32.23 | 30.96 |
| HORVU4Hr1G077310.2 | Barley | nucleus | 24.81 | 28.36 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 20.97 | 27.42 |
| HORVU2Hr1G071270.4 | Barley | nucleus | 12.28 | 27.12 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 12.79 | 26.88 |
| HORVU6Hr1G078520.1 | Barley | nucleus | 12.28 | 25.67 |
| HORVU1Hr1G082310.1 | Barley | nucleus | 14.83 | 21.97 |
| HORVU5Hr1G068450.1 | Barley | nucleus | 13.81 | 20.15 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 15.35 | 19.11 |
| HORVU6Hr1G078510.5 | Barley | nucleus | 12.02 | 18.29 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | UniProt:A0A287TGD8 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G017530 | EnsemblPlants:HORVU6Hr1G017530.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 |
| PANTHER:PTHR31190:SF44 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46B33C | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:-:41456742..41460727
Molecular Weight (calculated)
42594.7 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.541
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGASLEDA KVPVVARKVT GATLWTEKKK PRQGGGGGRR FTGLGGCRGL GRDDNEEDFE ADFQEFKAYS GDSDLELRRS RVDEKDDDDE VVEIKPFAVV
101: KRPLSQDGLS TMTTAGFDGP SAKRKRKNQF RGIRQRPWGK WAAEIRDPSK GVRVWLGTFN SAEAAARAYD VEARRIRGKK AKVNFPEEPA TPQKRRARPA
201: PPKAPKPSAT QEPAVNNLAN PSAFVYPSAD FASNQPLALP YNMSFVPAMN SAAPVEASVM NLYSDQGSNS VGFSDLVWDF DTKTPDISPI APISTTAEGA
301: ESALVQSDAY NPVVIAEVPE SVLVQSNTYN SVVPPVMENN DADSEPWMKF LSDDGMDESI DSLLNFGVPQ DVIGNMDLWS FDDMPICGEL C
101: KRPLSQDGLS TMTTAGFDGP SAKRKRKNQF RGIRQRPWGK WAAEIRDPSK GVRVWLGTFN SAEAAARAYD VEARRIRGKK AKVNFPEEPA TPQKRRARPA
201: PPKAPKPSAT QEPAVNNLAN PSAFVYPSAD FASNQPLALP YNMSFVPAMN SAAPVEASVM NLYSDQGSNS VGFSDLVWDF DTKTPDISPI APISTTAEGA
301: ESALVQSDAY NPVVIAEVPE SVLVQSNTYN SVVPPVMENN DADSEPWMKF LSDDGMDESI DSLLNFGVPQ DVIGNMDLWS FDDMPICGEL C
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.