Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G129400.1 | Wheat | nucleus | 84.71 | 81.35 |
| TraesCS5A01G112600.1 | Wheat | nucleus | 82.48 | 78.96 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 84.71 | 78.01 |
| HORVU2Hr1G071270.4 | Barley | nucleus | 20.38 | 36.16 |
| HORVU6Hr1G078520.1 | Barley | nucleus | 19.75 | 33.16 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 27.07 | 32.08 |
| HORVU1Hr1G082310.1 | Barley | nucleus | 25.48 | 30.3 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 17.52 | 29.57 |
| Zm00001d053195_P002 | Maize | nucleus | 30.57 | 29.18 |
| Solyc04g051360.2.1 | Tomato | nucleus | 27.71 | 28.71 |
| OQU78803 | Sorghum | nucleus | 30.25 | 27.86 |
| KRH64120 | Soybean | nucleus | 24.84 | 27.76 |
| KRH43369 | Soybean | nucleus | 25.16 | 26.69 |
| Os12t0168100-01 | Rice | nucleus | 28.66 | 26.39 |
| HORVU5Hr1G068450.1 | Barley | nucleus | 22.29 | 26.12 |
| Bra037794.1-P | Field mustard | nucleus | 30.57 | 25.2 |
| Bra031903.1-P | Field mustard | nucleus | 30.25 | 25.07 |
| AT5G64750.1 | Thale cress | nucleus | 31.21 | 25.06 |
| Zm00001d023535_P001 | Maize | nucleus | 33.76 | 25.06 |
| CDY31304 | Canola | nucleus | 30.25 | 24.93 |
| KRH59504 | Soybean | nucleus | 27.39 | 24.93 |
| CDY46821 | Canola | nucleus | 30.25 | 24.87 |
| Bra024325.1-P | Field mustard | nucleus | 30.89 | 24.56 |
| CDY14506 | Canola | nucleus | 30.57 | 24.49 |
| CDY08853 | Canola | nucleus | 30.57 | 24.3 |
| KRH53825 | Soybean | nucleus | 24.84 | 24.22 |
| VIT_07s0031g01980.t01 | Wine grape | nucleus | 27.07 | 24.15 |
| HORVU6Hr1G078510.5 | Barley | nucleus | 19.75 | 24.12 |
| PGSC0003DMT400050718 | Potato | nucleus | 30.25 | 23.99 |
| CDX81250 | Canola | nucleus | 29.62 | 23.08 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 19.11 | 20.07 |
| HORVU4Hr1G077310.2 | Barley | nucleus | 20.38 | 18.71 |
| HORVU0Hr1G021820.1 | Barley | nucleus | 14.97 | 16.43 |
| HORVU6Hr1G082880.1 | Barley | nucleus | 18.79 | 15.99 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 15.92 | 15.62 |
| HORVU6Hr1G017530.1 | Barley | nucleus | 19.11 | 15.35 |
| HORVU6Hr1G083530.1 | Barley | nucleus | 19.11 | 15.15 |
| HORVU7Hr1G090440.1 | Barley | nucleus | 17.83 | 14.97 |
| HORVU7Hr1G032750.1 | Barley | nucleus, plastid | 17.83 | 14.36 |
| HORVU6Hr1G082770.1 | Barley | nucleus | 17.52 | 14.14 |
| HORVU6Hr1G082820.1 | Barley | nucleus | 18.15 | 14.11 |
| HORVU6Hr1G082840.1 | Barley | nucleus | 13.69 | 13.78 |
| HORVU5Hr1G062940.1 | Barley | nucleus, plastid | 17.83 | 13.76 |
| HORVU6Hr1G083520.2 | Barley | nucleus, plastid | 13.69 | 13.31 |
| HORVU6Hr1G064370.1 | Barley | nucleus | 12.1 | 13.1 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EMBL:AK362061 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| UniProt:F2DDU4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009749 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0050832 | GO:GO:1902074 |
| EnsemblPlantsGene:HORVU5Hr1G036590 | EnsemblPlants:HORVU5Hr1G036590.2 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002006050 | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDU4]
Coordinates
chrchr5H:+:259516792..259519374
Molecular Weight (calculated)
32527.2 Da
IEP (calculated)
5.069
GRAVY (calculated)
-0.633
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALSPPTANT TTMWRRRQAQ EMSAMVSALA QVVAGGRGGG NEGGMAMASS AKRPAEHEAF TEEAWWSTSY
101: GDGDGDGGAR SASSFLAATP AASYSAYGAA AGDEELPSPS SAESGGGGGT PRKRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDDAEAA ARAYDAAALG
201: FRGSRAKLNF PESATIPPQQ QPPPAPASAM PPPQRPEALL ESQAYSHSHY ARFLVPSTGE PSLLPAGSTP RTPLIYSFGA GASYPLEPES RGEGTAGTEC
301: PAGPDGDLSS GVQP
101: GDGDGDGGAR SASSFLAATP AASYSAYGAA AGDEELPSPS SAESGGGGGT PRKRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDDAEAA ARAYDAAALG
201: FRGSRAKLNF PESATIPPQQ QPPPAPASAM PPPQRPEALL ESQAYSHSHY ARFLVPSTGE PSLLPAGSTP RTPLIYSFGA GASYPLEPES RGEGTAGTEC
301: PAGPDGDLSS GVQP
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.