Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031903.1-P | Field mustard | nucleus | 80.31 | 82.85 |
| CDY31304 | Canola | nucleus | 80.31 | 82.41 |
| CDY46821 | Canola | nucleus | 79.54 | 81.41 |
| Bra024325.1-P | Field mustard | nucleus | 81.33 | 80.51 |
| CDY14506 | Canola | nucleus | 80.05 | 79.85 |
| CDY08853 | Canola | nucleus | 80.05 | 79.24 |
| Bra037794.1-P | Field mustard | nucleus | 75.7 | 77.69 |
| CDX81250 | Canola | nucleus | 75.7 | 73.45 |
| AT1G43160.1 | Thale cress | nucleus | 19.18 | 39.06 |
| KRH64120 | Soybean | nucleus | 26.34 | 36.65 |
| AT5G13330.1 | Thale cress | nucleus | 19.18 | 35.38 |
| AT2G47520.1 | Thale cress | nucleus | 15.35 | 35.09 |
| Solyc04g051360.2.1 | Tomato | nucleus | 26.85 | 34.65 |
| KRH53825 | Soybean | nucleus | 28.13 | 34.16 |
| VIT_07s0031g01980.t01 | Wine grape | nucleus | 30.18 | 33.52 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 22.51 | 33.21 |
| AT5G50080.2 | Thale cress | nucleus | 19.44 | 33.19 |
| AT5G61890.1 | Thale cress | nucleus | 20.2 | 31.85 |
| TraesCS5A01G112600.1 | Wheat | nucleus | 26.34 | 31.4 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 25.06 | 31.21 |
| TraesCS5D01G129400.1 | Wheat | nucleus | 25.83 | 30.89 |
| AT5G07310.1 | Thale cress | nucleus | 20.46 | 30.42 |
| KRH43369 | Soybean | nucleus | 22.76 | 30.07 |
| AT2G33710.2 | Thale cress | nucleus | 17.65 | 29.87 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 25.83 | 29.62 |
| KRH59504 | Soybean | nucleus | 26.09 | 29.57 |
| PGSC0003DMT400050718 | Potato | nucleus | 28.9 | 28.54 |
| AT4G34410.1 | Thale cress | nucleus | 18.41 | 26.87 |
| OQU82952 | Sorghum | mitochondrion | 21.99 | 26.14 |
| Zm00001d053195_P002 | Maize | nucleus | 21.74 | 25.84 |
| AT3G16770.1 | Thale cress | nucleus | 15.86 | 25.0 |
| AT1G72360.2 | Thale cress | nucleus | 15.6 | 23.28 |
| OQU78803 | Sorghum | nucleus | 20.2 | 23.17 |
| Zm00001d023535_P001 | Maize | nucleus | 23.02 | 21.28 |
| AT3G14230.1 | Thale cress | nucleus | 20.2 | 20.84 |
| Os12t0168100-01 | Rice | nucleus | 18.16 | 20.82 |
| AT1G53910.1 | Thale cress | nucleus | 17.65 | 19.27 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:836596 | UniProt:A0A178UFQ7 | Symbol:ABR1 |
| ProteinID:AED97946.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G64750 | EnsemblPlantsGene:AT5G64750 | RefSeq:AT5G64750 |
| TAIR:AT5G64750 | RefSeq:AT5G64750-TAIR-G | EnsemblPlants:AT5G64750.1 | TAIR:AT5G64750.1 | EMBL:AY140092 | Unigene:At.71233 |
| ProteinID:BAB10308.1 | EMBL:BT008480 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009738 | GO:GO:0009749 | GO:GO:0009788 |
| GO:GO:0009873 | GO:GO:0009987 | GO:GO:0050832 | GO:GO:1902074 | InterPro:IPR001471 | InterPro:IPR036955 |
| RefSeq:NP_201280.1 | ProteinID:OAO91942.1 | PFAM:PF00847 | PO:PO:0000293 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | UniProt:Q9FGF8 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00000A78FA |
| SEG:seg | : | : | : | : | : |
Description
ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
Coordinates
chr5:+:25891449..25893888
Molecular Weight (calculated)
42816.0 Da
IEP (calculated)
8.425
GRAVY (calculated)
-0.874
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.