Factsheet for AT1G53910.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25681	Canola	nucleus	70.67	82.41
CDY02492	Canola	nucleus	70.39	82.35
Bra030919.1-P	Field mustard	nucleus	70.39	82.35
AT3G14230.1	Thale cress	nucleus	65.92	62.27
AT2G47520.1	Thale cress	nucleus	20.95	43.86
TraesCS5D01G320800.1	Wheat	nucleus	22.35	40.4
TraesCS5A01G314600.1	Wheat	nucleus	22.35	39.22
TraesCS5B01G315500.2	Wheat	nucleus	22.63	38.57
Os01t0313300-01	Rice	nucleus	21.51	37.2
AT1G72360.2	Thale cress	nucleus	26.54	36.26
EES00666	Sorghum	nucleus	22.07	34.8
Zm00001d009103_P001	Maize	nucleus	21.79	33.91
Zm00001d040651_P001	Maize	nucleus	22.35	33.76
AT1G43160.1	Thale cress	nucleus	17.04	31.77
AT3G16770.1	Thale cress	nucleus	21.23	30.65
HORVU5Hr1G080790.1	Barley	nucleus	22.91	27.42
AT5G13330.1	Thale cress	nucleus	14.8	25.0
AT5G50080.2	Thale cress	nucleus	15.92	24.89
AT2G33710.2	Thale cress	nucleus	14.8	22.94
AT5G61890.1	Thale cress	nucleus	15.64	22.58
AT5G07310.1	Thale cress	nucleus	15.92	21.67
Zm00001d007033_P001	Maize	plastid	16.48	20.77
AT4G34410.1	Thale cress	nucleus	15.36	20.52
AT5G64750.1	Thale cress	nucleus	19.27	17.65

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:841829	ProteinID:AAF02863.1	ProteinID:AEE33022.1	ProteinID:AEE33023.1
EMBL:AF003105	EMBL:AK316980	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ArrayExpress:AT1G53910	EnsemblPlantsGene:AT1G53910
RefSeq:AT1G53910	TAIR:AT1G53910	RefSeq:AT1G53910-TAIR-G	EnsemblPlants:AT1G53910.1	TAIR:AT1G53910.1	EMBL:AY037260
EMBL:AY057545	EMBL:AY088204	EMBL:AY113051	UniProt:B9DG10	InterPro:DNA-bd_dom_sf	GO:GO:0001666
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	GO:GO:0016020	GO:GO:0043565	GO:GO:0070483	GO:GO:2000280	InterPro:IPR001471
InterPro:IPR036955	RefSeq:NP_001031185.1	RefSeq:NP_175794.1	PFAM:PF00847	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	UniProt:Q9SSA8	Symbol:RAP2.12
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00000A3356	SEG:seg	:	:

Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]

Coordinates

chr1:+:20134844..20137013

Molecular Weight (calculated)

39802.9 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.735

Length

358 amino acids

Sequence
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.