Factsheet for Bra030919.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000338.1-P
Bra037671.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53910.1	Bra000338.1-P	AT2G44040.1	21798944
AT1G53910.1	Bra037671.1-P	AT2G44040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02492	Canola	nucleus	100.0	100.0
CDY25681	Canola	nucleus	97.71	97.39
AT1G53910.1	Thale cress	nucleus	82.35	70.39
Bra001541.1-P	Field mustard	nucleus	63.4	55.11
Bra027355.1-P	Field mustard	nucleus	67.32	54.35
Bra021543.1-P	Field mustard	nucleus	63.73	53.42
TraesCS5D01G320800.1	Wheat	nucleus	23.86	36.87
TraesCS5A01G314600.1	Wheat	nucleus	24.51	36.76
TraesCS5B01G315500.2	Wheat	nucleus	24.18	35.24
Os01t0313300-01	Rice	nucleus	23.2	34.3
Bra021401.1-P	Field mustard	nucleus	22.22	31.92
Bra003883.1-P	Field mustard	nucleus	25.16	31.69
EES00666	Sorghum	nucleus	22.88	30.84
Zm00001d040651_P001	Maize	nucleus	23.86	30.8
Zm00001d009103_P001	Maize	nucleus	22.88	30.43
Bra016063.1-P	Field mustard	nucleus	24.84	30.28
Bra022176.1-P	Field mustard	nucleus	22.88	28.93
Bra021200.1-P	Field mustard	nucleus	22.88	28.81
Bra001640.1-P	Field mustard	nucleus	21.9	27.35
HORVU5Hr1G080790.1	Barley	nucleus	24.18	24.75
Bra034624.1-P	Field mustard	nucleus	13.4	24.26
Bra019622.1-P	Field mustard	nucleus	16.34	22.03
Bra005480.1-P	Field mustard	nucleus	15.36	21.76
Bra021871.1-P	Field mustard	nucleus	15.03	21.3
Bra009272.1-P	Field mustard	nucleus	16.67	20.16
Bra029302.1-P	Field mustard	nucleus	16.67	20.08
Bra008835.1-P	Field mustard	nucleus	14.05	19.82
Bra028703.1-P	Field mustard	nucleus	16.34	19.61
Bra005932.1-P	Field mustard	nucleus	15.69	18.82
Bra006195.1-P	Field mustard	nucleus	15.36	18.22
Bra023404.1-P	Field mustard	nucleus	14.71	18.07
Zm00001d007033_P001	Maize	plastid	16.67	17.96
Bra031903.1-P	Field mustard	nucleus	20.91	16.89
Bra011529.1-P	Field mustard	nucleus	14.38	16.79
Bra024325.1-P	Field mustard	nucleus	21.24	16.46
Bra037794.1-P	Field mustard	nucleus	20.26	16.27
Bra017656.1-P	Field mustard	nucleus	14.05	15.93

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra030919	EnsemblPlants:Bra030919.1
EnsemblPlants:Bra030919.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0001666	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005886	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0043565	GO:GO:0070483	GO:GO:2000280	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EQ48
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002545625
SEG:seg	:	:	:	:	:

Description

AT3G14230 (E=3e-061) RAP2.2 | RAP2.2; DNA binding / transcription factor

Coordinates

chrA08:-:782722..784671

Molecular Weight (calculated)

33958.9 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.765

Length

306 amino acids

Sequence
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFLWPDLKK SSKKRSSFFD LDDEFEADFQ GFKDDSSIDC DDAKPFVFAG ARKPAVSAAT ADSVIGKKVA DGEGERSAKR
101: KRKSQYRGIR QRPWGKWAAE IRDPREAEEA ARAYDAAARR IRGSKAKVNF PEEKENPPAK KVAPNPSPVL AQNLDNSFDN MCFMEEKHQV NNNSNQFGGN
201: GYHQYFSSDQ GSNSFGCSEF GWNDQAPITP EISSAFINNN SATFAEEADP AKQLKVMDFE TTYNSTEWDS SLDFFSGDAV ATQDNGANPM ELWSIDEIDS
301: MIGGVF

Best Arabidopsis Sequence Match ( AT1G53910.1 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.