Factsheet for Bra029302.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019622.1-P	Field mustard	nucleus	75.59	84.58
Bra009272.1-P	Field mustard	nucleus	62.6	62.85
Bra005932.1-P	Field mustard	nucleus	61.42	61.18
Bra028703.1-P	Field mustard	nucleus	57.87	57.65
Solyc03g118190.2.1	Tomato	nucleus	40.16	41.8
PGSC0003DMT400036934	Potato	nucleus	41.73	38.41
KRH63879	Soybean	nucleus	38.98	37.79
KRH54084	Soybean	nucleus	39.76	37.55
KRH63877	Soybean	nucleus	29.53	37.31
Bra008835.1-P	Field mustard	nucleus	31.5	36.87
VIT_17s0000g00200.t01	Wine grape	nucleus	35.43	36.59
Bra023404.1-P	Field mustard	nucleus	34.65	35.34
Bra006195.1-P	Field mustard	nucleus	35.04	34.5
GSMUA_Achr11P...	Banana	nucleus	33.07	32.81
Bra005480.1-P	Field mustard	nucleus	27.17	31.94
Bra021871.1-P	Field mustard	nucleus	26.77	31.48
Bra034624.1-P	Field mustard	nucleus	19.29	28.99
Bra021401.1-P	Field mustard	nucleus	20.87	24.88
Bra011529.1-P	Field mustard	nucleus	22.83	22.14
Bra017656.1-P	Field mustard	nucleus	22.05	20.74
Bra022176.1-P	Field mustard	nucleus	19.68	20.66
Bra031903.1-P	Field mustard	nucleus	30.71	20.58
Bra024325.1-P	Field mustard	nucleus	31.5	20.25
Bra021200.1-P	Field mustard	nucleus	19.29	20.16
Bra037794.1-P	Field mustard	nucleus	29.92	19.95
Bra001640.1-P	Field mustard	nucleus	18.9	19.59
Bra016063.1-P	Field mustard	nucleus	18.9	19.12
Bra003883.1-P	Field mustard	nucleus	18.11	18.93
Bra030919.1-P	Field mustard	nucleus	20.08	16.67
Bra001541.1-P	Field mustard	nucleus	21.26	15.34
Bra021543.1-P	Field mustard	nucleus	21.65	15.07
Bra027355.1-P	Field mustard	nucleus	22.05	14.78

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra029302	EnsemblPlants:Bra029302.1
EnsemblPlants:Bra029302.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EKI5	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025459C2	SEG:seg

Description

AT5G61890 (E=8e-081) | AP2 domain-containing transcription factor family protein

Coordinates

chrA02:-:26003710..26004757

Molecular Weight (calculated)

28040.7 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.949

Length

254 amino acids

Sequence
(BLAST)

001: MDPRYYGNMP FGGEENEGTE EDENLFPVYS ARSKHDMRVM VSALSQVIGN QQGSSHDSPS VYNPQDPSQP VAPTHQDQGN LRTRHYRGVR QRPWGKWAAE
101: IRDPQKAARV WLGTFETAES AALAYDEAAL KFKGSKAKLN FPERVQLGSN IINNQLSNST CYSSNQSETQ NIPYYNQYYQ DGSNSDMLSF NLGGGYGSGN
201: GNGVSMSHDH SLSTITTAAT TSSSSGGSSR QQEEQDYARF WRFGDSSSSP HSGY

Best Arabidopsis Sequence Match ( AT5G61890.1 )
(BLAST)

001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY

Arabidopsis Description

ERF114Ethylene-responsive transcription factor ERF114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.