Factsheet for Bra005480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17191	Canola	nucleus	98.15	98.15
CDY27952	Canola	nucleus	95.37	95.37
Bra021871.1-P	Field mustard	nucleus	77.31	77.31
AT2G33710.2	Thale cress	nucleus	77.31	72.29
Bra008835.1-P	Field mustard	nucleus	32.87	32.72
Bra034624.1-P	Field mustard	nucleus	23.61	30.18
Bra019622.1-P	Field mustard	nucleus	31.48	29.96
Bra023404.1-P	Field mustard	nucleus	33.33	28.92
Bra009272.1-P	Field mustard	nucleus	33.33	28.46
Bra028703.1-P	Field mustard	nucleus	32.87	27.84
Bra005932.1-P	Field mustard	nucleus	32.41	27.45
Bra021401.1-P	Field mustard	nucleus	26.85	27.23
Bra029302.1-P	Field mustard	nucleus	31.94	27.17
Bra006195.1-P	Field mustard	nucleus	32.41	27.13
Bra011529.1-P	Field mustard	nucleus	26.85	22.14
Bra017656.1-P	Field mustard	nucleus	26.85	21.48
Bra021200.1-P	Field mustard	nucleus	24.07	21.4
Bra001640.1-P	Field mustard	nucleus	23.61	20.82
Bra022176.1-P	Field mustard	nucleus	23.15	20.66
Bra016063.1-P	Field mustard	nucleus	23.61	20.32
Bra003883.1-P	Field mustard	nucleus	21.76	19.34
Bra031903.1-P	Field mustard	nucleus	32.41	18.47
Bra037794.1-P	Field mustard	nucleus	32.41	18.37
Bra024325.1-P	Field mustard	nucleus	32.41	17.72
Bra001541.1-P	Field mustard	nucleus	26.39	16.19
Bra021543.1-P	Field mustard	nucleus	26.39	15.62
Bra027355.1-P	Field mustard	nucleus	27.31	15.57
Bra030919.1-P	Field mustard	nucleus	21.76	15.36

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra005480	EnsemblPlants:Bra005480.1
EnsemblPlants:Bra005480.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CMP2	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002547311	SEG:seg

Description

AT2G33710 (E=5e-063) | AP2 domain-containing transcription factor family protein

Coordinates

chrA05:+:5730732..5732006

Molecular Weight (calculated)

23938.8 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.822

Length

216 amino acids

Sequence
(BLAST)

001: MHSGKRPLSP ESMAGKREEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSV NQPSSLTLQE QTNTRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT
101: AEEAALAYDK AAFEFRGQKA KLNFPEHILT NSSGPYGPYP STATSHDRIT VLPPPAIAPD ILLDQYGQFH SANSDSVANF SLTMPSSSSS LNQQEHIPKL
201: EDGKNVKNIN INKRRK

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.