Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005480.1-P | Field mustard | nucleus | 98.15 | 98.15 |
| CDY27952 | Canola | nucleus | 96.3 | 96.3 |
| AT2G33710.2 | Thale cress | nucleus | 77.31 | 72.29 |
| CDY37698 | Canola | mitochondrion | 55.56 | 71.01 |
| CDY53788 | Canola | golgi | 56.48 | 62.24 |
| CDY09787 | Canola | nucleus | 33.8 | 32.74 |
| CDX69647 | Canola | nucleus | 32.87 | 32.72 |
| CDY53152 | Canola | nucleus | 31.48 | 30.09 |
| CDY27480 | Canola | nucleus | 26.85 | 30.05 |
| CDX98982 | Canola | nucleus | 34.72 | 29.64 |
| CDX70027 | Canola | nucleus | 34.72 | 29.64 |
| CDY14051 | Canola | nucleus | 34.72 | 29.3 |
| CDY51428 | Canola | nucleus | 26.39 | 29.08 |
| CDX85656 | Canola | nucleus | 33.33 | 28.92 |
| CDY55173 | Canola | nucleus | 33.8 | 28.63 |
| CDX78288 | Canola | nucleus | 33.33 | 28.24 |
| CDX91131 | Canola | nucleus | 32.87 | 27.95 |
| CDX70498 | Canola | nucleus | 32.87 | 27.52 |
| CDX78517 | Canola | nucleus | 31.94 | 26.74 |
| CDX72909 | Canola | nucleus | 22.69 | 26.06 |
| CDX72481 | Canola | nucleus | 27.31 | 22.87 |
| CDY46253 | Canola | nucleus | 27.31 | 22.61 |
| CDY45310 | Canola | nucleus | 27.31 | 22.61 |
| CDX69054 | Canola | nucleus | 27.31 | 22.35 |
| CDX76278 | Canola | nucleus | 27.31 | 22.26 |
| CDX75430 | Canola | nucleus | 26.85 | 22.14 |
| CDX69056 | Canola | nucleus | 20.83 | 22.06 |
| CDY34977 | Canola | nucleus | 24.07 | 21.58 |
| CDY28337 | Canola | nucleus | 24.07 | 21.4 |
| CDX82392 | Canola | nucleus | 24.07 | 21.22 |
| CDX95906 | Canola | nucleus | 23.61 | 20.9 |
| CDY54628 | Canola | nucleus | 23.61 | 20.82 |
| CDX68269 | Canola | nucleus | 21.3 | 20.81 |
| CDY50643 | Canola | nucleus | 21.76 | 20.7 |
| CDX92094 | Canola | nucleus | 23.15 | 20.66 |
| CDX96402 | Canola | nucleus | 23.15 | 20.0 |
| CDY31304 | Canola | nucleus | 32.41 | 18.37 |
| CDY46821 | Canola | nucleus | 31.94 | 18.06 |
| CDY14506 | Canola | nucleus | 32.41 | 17.86 |
| CDY08853 | Canola | nucleus | 32.41 | 17.72 |
| CDX81250 | Canola | nucleus | 31.94 | 17.12 |
| CDX82492 | Canola | nucleus | 26.85 | 16.48 |
| CDX75756 | Canola | nucleus | 26.39 | 16.38 |
| CDY02492 | Canola | nucleus | 22.22 | 15.69 |
| CDX98435 | Canola | nucleus | 27.31 | 15.57 |
| CDY25681 | Canola | nucleus | 21.76 | 15.31 |
| CDY65334 | Canola | nucleus | 26.85 | 15.14 |
| CDY39107 | Canola | nucleus | 26.85 | 14.87 |
| CDX97559 | Canola | nucleus | 27.78 | 14.05 |
| CDY71587 | Canola | cytosol | 1.85 | 5.8 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078FW87 | UniProt:A0A078FW87 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY17191 | ProteinID:CDY17191 | ProteinID:CDY17191.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00095255001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF41 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EF4877 | SEG:seg | : | : | : |
Description
BnaA05g09970DBnaA05g09970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FW87]
Coordinates
chrLK032071:-:367958..369233
Molecular Weight (calculated)
23922.8 Da
IEP (calculated)
8.451
GRAVY (calculated)
-0.824
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSGKRPLSP ESMAGKREEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSV NQPSSLTLQE QSNTRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT
101: AEEAALAYDK AAFEFRGQKA KLNFPEHILT NSSGPYGPYP STATSHDRIT VMSPPAIAPD ILLDQYGQFH SANSDSVANF SLTMSSSSSS LNQQEHIPKL
201: EDGKNVKNIN INKRRK
101: AEEAALAYDK AAFEFRGQKA KLNFPEHILT NSSGPYGPYP STATSHDRIT VMSPPAIAPD ILLDQYGQFH SANSDSVANF SLTMSSSSSS LNQQEHIPKL
201: EDGKNVKNIN INKRRK
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.