Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53910.1 | CDX83447 | AT2G44040.1 | 21798944 |
| AT1G53910.1 | CDX95582 | AT2G44040.1 | 21798944 |
| AT1G53910.1 | CDY23412 | AT2G44040.1 | 21798944 |
| AT1G53910.1 | CDY30450 | AT2G44040.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030919.1-P | Field mustard | nucleus | 97.39 | 97.71 |
| CDY02492 | Canola | nucleus | 97.39 | 97.71 |
| AT1G53910.1 | Thale cress | nucleus | 82.41 | 70.67 |
| CDX75756 | Canola | nucleus | 63.84 | 56.32 |
| CDX82492 | Canola | nucleus | 64.5 | 56.25 |
| CDX98435 | Canola | nucleus | 67.43 | 54.62 |
| CDY65334 | Canola | nucleus | 63.19 | 50.65 |
| CDY39107 | Canola | nucleus | 63.84 | 50.26 |
| CDX97559 | Canola | nucleus | 67.75 | 48.71 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 23.78 | 36.87 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 24.43 | 36.76 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 24.1 | 35.24 |
| CDX68269 | Canola | nucleus | 25.08 | 34.84 |
| CDY27480 | Canola | nucleus | 21.82 | 34.72 |
| CDY51428 | Canola | nucleus | 22.15 | 34.69 |
| Os01t0313300-01 | Rice | nucleus | 23.13 | 34.3 |
| CDX72909 | Canola | nucleus | 19.54 | 31.91 |
| CDY50643 | Canola | nucleus | 23.45 | 31.72 |
| EES00666 | Sorghum | nucleus | 22.8 | 30.84 |
| Zm00001d040651_P001 | Maize | nucleus | 23.78 | 30.8 |
| Zm00001d009103_P001 | Maize | nucleus | 22.8 | 30.43 |
| CDX96402 | Canola | nucleus | 24.43 | 30.0 |
| CDX95906 | Canola | nucleus | 23.13 | 29.1 |
| CDY34977 | Canola | nucleus | 22.8 | 29.05 |
| CDX92094 | Canola | nucleus | 22.8 | 28.93 |
| CDY28337 | Canola | nucleus | 22.48 | 28.4 |
| CDX82392 | Canola | nucleus | 21.82 | 27.35 |
| CDY54628 | Canola | nucleus | 21.82 | 27.35 |
| CDY37698 | Canola | mitochondrion | 14.33 | 26.04 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 24.1 | 24.75 |
| CDY53788 | Canola | golgi | 14.33 | 22.45 |
| CDY17191 | Canola | nucleus | 15.31 | 21.76 |
| CDY27952 | Canola | nucleus | 14.98 | 21.3 |
| CDY53152 | Canola | nucleus | 15.31 | 20.8 |
| CDX98982 | Canola | nucleus | 16.29 | 19.76 |
| CDX70027 | Canola | nucleus | 16.29 | 19.76 |
| CDY55173 | Canola | nucleus | 16.29 | 19.61 |
| CDY14051 | Canola | nucleus | 16.29 | 19.53 |
| CDX69647 | Canola | nucleus | 13.68 | 19.35 |
| CDY09787 | Canola | nucleus | 13.68 | 18.83 |
| CDX78288 | Canola | nucleus | 15.31 | 18.43 |
| Zm00001d007033_P001 | Maize | plastid | 16.94 | 18.31 |
| CDX78517 | Canola | nucleus | 14.98 | 17.83 |
| CDX85656 | Canola | nucleus | 14.33 | 17.67 |
| CDX70498 | Canola | nucleus | 14.66 | 17.44 |
| CDX91131 | Canola | nucleus | 14.33 | 17.32 |
| CDX76278 | Canola | nucleus | 14.33 | 16.6 |
| CDY14506 | Canola | nucleus | 21.17 | 16.58 |
| CDY31304 | Canola | nucleus | 20.52 | 16.54 |
| CDY46821 | Canola | nucleus | 20.52 | 16.49 |
| CDX75430 | Canola | nucleus | 14.01 | 16.41 |
| CDY08853 | Canola | nucleus | 20.85 | 16.2 |
| CDY45310 | Canola | nucleus | 13.68 | 16.09 |
| CDY46253 | Canola | nucleus | 13.68 | 16.09 |
| CDX69054 | Canola | nucleus | 13.68 | 15.91 |
| CDX72481 | Canola | nucleus | 13.03 | 15.5 |
| CDX81250 | Canola | nucleus | 19.87 | 15.14 |
| CDX69056 | Canola | nucleus | 8.47 | 12.75 |
| CDY71587 | Canola | cytosol | 0.65 | 2.9 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | GO:A0A078GJY2 | UniProt:A0A078GJY2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY25681 | ProteinID:CDY25681 | ProteinID:CDY25681.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00033020001 | InterPro:IPR001471 | InterPro:IPR036955 | PFscan:PS51032 |
| PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EF176C | SEG:seg |
Description
BnaC03g69940DBnaC03g69940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJY2]
Coordinates
chrLK032179:-:18234..20300
Molecular Weight (calculated)
34175.2 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.775
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF IPPPRSRRVT SEFLWPDLKK SSKKRSSFFD LDDEFEADFQ GFKDDSSIDC DDAKPFVFAG ARKPAVSAAT ADSVFGKKVV DGEGERSAKR
101: KRKSQYRGIR QRPWGKWAAE IRDPREGSRE AARAYDAAAR RIRGSKAKVN FPEEKENPPA KKVAPNPSPV LAQNLDNSFD NMCFMEEKHQ VNNNNNQFGG
201: NGYHQYFSSD QGSNSFGCSE FGWNDQAPIT PEISSAFINN NSVTFAEEAD PAKQLKVMDF ETTYNSTEWD SSLDFFSGDA VATQDNGANP MELWSIDEIN
301: SMIGGVF
101: KRKSQYRGIR QRPWGKWAAE IRDPREGSRE AARAYDAAAR RIRGSKAKVN FPEEKENPPA KKVAPNPSPV LAQNLDNSFD NMCFMEEKHQ VNNNNNQFGG
201: NGYHQYFSSD QGSNSFGCSE FGWNDQAPIT PEISSAFINN NSVTFAEEAD PAKQLKVMDF ETTYNSTEWD SSLDFFSGDA VATQDNGANP MELWSIDEIN
301: SMIGGVF
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.