Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97559 | Canola | nucleus | 93.93 | 83.37 |
| CDX75756 | Canola | nucleus | 72.3 | 78.74 |
| CDX82492 | Canola | nucleus | 71.5 | 76.99 |
| AT3G14230.1 | Thale cress | nucleus | 75.46 | 75.46 |
| CDY39107 | Canola | nucleus | 77.57 | 75.38 |
| CDY65334 | Canola | nucleus | 75.99 | 75.2 |
| CDY25681 | Canola | nucleus | 54.62 | 67.43 |
| CDY02492 | Canola | nucleus | 54.35 | 67.32 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 23.48 | 44.95 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 23.75 | 44.12 |
| Os01t0313300-01 | Rice | nucleus | 23.22 | 42.51 |
| CDY27480 | Canola | nucleus | 21.64 | 42.49 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 23.48 | 42.38 |
| CDY51428 | Canola | nucleus | 21.9 | 42.35 |
| CDX68269 | Canola | nucleus | 23.48 | 40.27 |
| EES00666 | Sorghum | nucleus | 23.22 | 38.77 |
| CDX72909 | Canola | nucleus | 19.0 | 38.3 |
| Zm00001d009103_P001 | Maize | nucleus | 23.22 | 38.26 |
| Zm00001d040651_P001 | Maize | nucleus | 23.48 | 37.55 |
| CDY50643 | Canola | nucleus | 22.43 | 37.44 |
| CDX95906 | Canola | nucleus | 22.43 | 34.84 |
| CDX92094 | Canola | nucleus | 22.16 | 34.71 |
| CDY34977 | Canola | nucleus | 21.9 | 34.44 |
| CDY54628 | Canola | nucleus | 22.16 | 34.29 |
| CDX82392 | Canola | nucleus | 21.9 | 33.88 |
| CDY28337 | Canola | nucleus | 21.64 | 33.74 |
| CDY37698 | Canola | mitochondrion | 15.04 | 33.73 |
| CDX96402 | Canola | nucleus | 21.64 | 32.8 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 23.48 | 29.77 |
| CDY53788 | Canola | golgi | 14.78 | 28.57 |
| CDY17191 | Canola | nucleus | 15.57 | 27.31 |
| CDY27952 | Canola | nucleus | 15.57 | 27.31 |
| Zm00001d007033_P001 | Maize | plastid | 18.47 | 24.65 |
| CDY14051 | Canola | nucleus | 15.57 | 23.05 |
| CDX69647 | Canola | nucleus | 13.19 | 23.04 |
| CDX98982 | Canola | nucleus | 15.3 | 22.92 |
| CDX70027 | Canola | nucleus | 15.3 | 22.92 |
| CDY55173 | Canola | nucleus | 15.3 | 22.75 |
| CDY53152 | Canola | nucleus | 13.46 | 22.57 |
| CDY09787 | Canola | nucleus | 13.19 | 22.42 |
| CDX78288 | Canola | nucleus | 15.04 | 22.35 |
| CDX78517 | Canola | nucleus | 14.51 | 21.32 |
| CDX70498 | Canola | nucleus | 14.51 | 21.32 |
| CDX85656 | Canola | nucleus | 13.98 | 21.29 |
| CDX91131 | Canola | nucleus | 13.98 | 20.87 |
| CDX75430 | Canola | nucleus | 14.25 | 20.61 |
| CDY31304 | Canola | nucleus | 20.58 | 20.47 |
| CDY46821 | Canola | nucleus | 20.58 | 20.42 |
| CDX76278 | Canola | nucleus | 14.25 | 20.38 |
| CDY45310 | Canola | nucleus | 13.72 | 19.92 |
| CDY46253 | Canola | nucleus | 13.72 | 19.92 |
| CDX69054 | Canola | nucleus | 13.72 | 19.7 |
| CDY14506 | Canola | nucleus | 20.32 | 19.64 |
| CDX72481 | Canola | nucleus | 13.19 | 19.38 |
| CDY08853 | Canola | nucleus | 20.05 | 19.24 |
| CDX81250 | Canola | nucleus | 19.0 | 17.87 |
| CDX69056 | Canola | nucleus | 9.23 | 17.16 |
| CDY71587 | Canola | cytosol | 0.53 | 2.9 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078E8L6 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX98435 |
| ProteinID:CDX98435 | ProteinID:CDX98435.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00106038001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF0CF4 | SEG:seg | : | : | : | : |
Description
BnaC05g39400D
Coordinates
chrLK031905:-:67090..69382
Molecular Weight (calculated)
41779.1 Da
IEP (calculated)
4.731
GRAVY (calculated)
-0.782
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF IPPSRSRRVT SEYLWPDLKN KGKASKKKKR SDFLDLDDEF EADFQGFKDG ASFDCEDEFD VDDDVFADVK PFVFAAGAKP VASPPAAFAS
101: ASAGSVSGKK TIESGGQAEK SAKRKRKNQY RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGNK AKVNFPEEMV PSVTHKRPAA
201: KKPVAKPNQS PALVQQPSQY CNNSFDNMGH DSSFGDVSFM EEKPQMYNNQ FFDVGGNNGY QYFSSDQGSN SLDCSEFGWS DHTPKTPEIS SMLVNSNQAP
301: FIEETNPAKK LKTNSEDGTS NNGNSDDLMA YLNNALWESP LEVEAMFGGD AATMTQEEGT PMDLWSLDDI NSMLDGGVF
101: ASAGSVSGKK TIESGGQAEK SAKRKRKNQY RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGNK AKVNFPEEMV PSVTHKRPAA
201: KKPVAKPNQS PALVQQPSQY CNNSFDNMGH DSSFGDVSFM EEKPQMYNNQ FFDVGGNNGY QYFSSDQGSN SLDCSEFGWS DHTPKTPEIS SMLVNSNQAP
301: FIEETNPAKK LKTNSEDGTS NNGNSDDLMA YLNNALWESP LEVEAMFGGD AATMTQEEGT PMDLWSLDDI NSMLDGGVF
001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGIYL
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF
Arabidopsis Description
RAP2-2Ethylene-responsive transcription factor RAP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.